CX309050

Overview
NameCX309050
Unique NameCX309050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length283
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX309050 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.261e-26
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:    6 IAQDDSRHLLPRFQPENLEHNKKLFERVNELAVKKGCTQSQLALAWVHHQGDDVCPIPGTTKIENLNQNIK 218
            ++ +D R  LPRFQ ENLE+NK L+ER+ E+AV+KGCT SQLALAWVHHQG+DVCPIPGTTKIENLNQN+K
Sbjct:  232 MSNEDYRKYLPRFQAENLENNKNLYERICEMAVRKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNMK 302
[Close]
BLAST of CX309050 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:   12 QDDSRHLLPRFQPENLEHNKKLFERVNELAVKKGCTQSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLT 239
            + D R   PR+Q EN   N +L  ++ ++A     T  QL+LAW+  QGDD+ PIPGT +++ L +N  AL VKL+
Sbjct:  227 EGDFRRKAPRYQKENFYKNLELVTKIEKIATANNITPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLS 302
The following BLAST results are available for this feature:
BLAST of CX309050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
A115_TOBAC1.261e-2674.65Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YAKC_SCHPO5.145e-1242.11Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionC21007G11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309050 ID=CX309050; Name=CX309050; organism=Citrus clementina; type=EST; length=283bp
GCGGGATTGCACAGGATGATTCTAGACATCTTCTACCCAGGTTCCAACCT
GAAAATTTAGAGCATAACAAAAAGCTATTTGAACGTGTTAATGAACTAGC
TGTAAAGAAAGGATGCACCCAATCTCAGCTTGCATTAGCATGGGTTCATC
ACCAAGGAGATGATGTGTGTCCAATTCCTGGAACCACCAAGATTGAAAAC
CTGAATCAAAATATTAAAGCTCTGTCAGTGAAACTAACTCCGGAAGAAAT
TGCTGAGCTTGAATCCATTGCTTCAGCAGATGC
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