DY256599

Overview
NameDY256599
Unique NameDY256599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length934
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256599_ssr332 microsatellite DY256599_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9714 contig Ccv1_Contig9714:4..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256599 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.810e-15
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:  577 VVASMYWPEVIKYRGVVSAQSHNEEII*DLYKSIQDPQKGLVHGGIIREH 726
            VVASM WPE+ KYRG+VSAQ+H EEII DLYK +QDPQ+GLVH G+IREH
Sbjct:  738 VVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREH 787
[Close]
BLAST of DY256599 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  577 VVASMYWPEVIKYRGVVSAQSHNEEII*DLYKSIQDPQKGLVHGGIIRE 723
            VVAS  WPEV KY G+VSAQ+H +E+I DLYK  QDPQ+G V GG+IRE
Sbjct:  739 VVASQDWPEVTKYAGLVSAQAHRQELIEDLYKIWQDPQRGTVSGGMIRE 787
[Close]
BLAST of DY256599 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:  577 VVASMYWPEVIKYRGVVSAQSHNEEII*DLYKSIQDPQKGLVHGGIIREHDLLPSAY 747
            VVASM WPEV KY+ +VS QSH EEII +LY  ++DP KG++ GG+IRE  LL S Y
Sbjct:  794 VVASMDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRE--LLRSFY 848
The following BLAST results are available for this feature:
BLAST of DY256599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGOL_ARATH1.810e-1576.00Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1C_ORYSJ2.705e-1167.35Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ6.027e-1161.40Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256599 ID=DY256599; Name=DY256599; organism=Citrus clementina; type=EST; length=934bp
GAGGTGATTGAATCAGTGTTGAGAGGATATCGTCGAAATCATAGCAAAAT
CCCATAAATTGCTCAAATCTGTTCCACGTATAGTAAAATCGGATAATGAA
ATTAATTGCCAATGGGAGTGCGGTCGTATGAGGCTGAAGTAAATTTGAAA
TCGCTGTAGAGAAATTGAAGTCGAATACATCTCTGCGGCAGCCAACTACG
GCCGACATTGGGCAGAGCCGAAACTTTAGGAATTAGGCAAATGTAATTTA
TGGAAAAGGGTTGGAAAAAGTCTGTTTGATCTGTTGATGAGCCGTTCGAT
CGGACGCAACAGGATGGAAGAAGCAAGATGATATTTATTTATTGGAGAAG
AAATTGAAGAAGGAGCATGCATATAGTTTTCAATAAATTTGTCCAACGAA
CTGTGCAGTTCATTGTCATACAGTATTCAGAGGAAGATGACTTCATGAGC
AATTTATATCAAAAGTTGGAAAAAGAAATGCACAAAATGGTGGCAGTCTT
TTCAAATGAAACGGGAACAACTGCAAAGGCTCAAGTGAATAGTTTAATGA
AGTTGAAAGTGCTGGGCTAAACCGAGGTGGTGGCCTCGATGTATTGGCCA
GAAGTAATCAAGTACAGAGGAGTTGTCTCTGCCCAGTCACACAATGAGGA
AATTATCTGAGATCTCTATAAATCTATTCAAGATCCTCAGAAAGGTTTAG
TTCATGGAGGAATAATCAGGGAGCATGATCTACTACCATCAGCTTACTAC
AATCATGAAGTAACAACAAAAAATGGCTTGTTNCACTTAAGCCCGTGCGT
TGAACTAAGTGACTTTTTTTGGGAATAATTGTTTTCATTTCTATTAATAC
ATGACGTAAATATTGTCTGCCCCCAACCTCACTTTTTTTTGCATTACTTA
CAAAGATCCAAAATATTAATTCAGCATGTTTAAT
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