DY256601

Overview
NameDY256601
Unique NameDY256601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length973
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256601_ssr961 microsatellite DY256601_ssr961:961..970. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9716 contig Ccv1_Contig9716:4..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY256601 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.272e-23
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:  435 TETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 623
            +E ++LEFNQYT GSRWRKT INR+DHRE+GNE DGFYGGIRK+N +E+I+MWKRLWP  +LE
Sbjct:  309 SEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371
[Close]
BLAST of DY256601 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.909e-21
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:  399 H*HDFCNIVFMVTETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 623
            H H  C++    +ET++LEFNQYT GSRWR+T I R DH+EEGNE DGFYGGIRK+N +EEI MWKR WP  +LE
Sbjct:  302 HNHCHCHL----SETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE 371
[Close]
BLAST of DY256601 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.683e-17
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 3 
Query:  438 ETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 623
            E +++EF Q+ P S WR+T I RKDHRE GNE +GFYGG++K+  EEEI  WK+LWP + LE
Sbjct:  310 ENVVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371
The following BLAST results are available for this feature:
BLAST of DY256601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB118_ARATH3.272e-2373.02F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
FB121_ARATH8.909e-2164.00F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH2.683e-1758.06F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AB02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256601 ID=DY256601; Name=DY256601; organism=Citrus clementina; type=EST; length=973bp
GTTTCCTAAATGTTCTGTTGTTTGCTAAGTTGTCATCTTTCGGCTAATGC
AGGGCATCATTGGTCATTATGATCTTCCTAATCTTCATTTATTTGTATGT
CTGTTTCTCCAAGCTGTTAGGGTCAGTTGTTTTCAAGTAAAGGTCCCTGA
AACCTCAGTCATGTTGACCCACTAGCCTAATTTTCTATCTGCAACTGCAT
CTTAAAAGATGTAAAGGTTCTTTTTTGTTATCCACATCTGCAACTTGACA
GAGCAGGGAATCTGCATGCATCTGTGACATTCAAATAAAGCTCACTTTCA
CAATTTCTCCATTTGTTGTGGATGGAAAATTATGTGAATGAATGGTTTTT
GCTTATGATGATTATGATAGCTTACAATCGAAGCATTAAGTTTGTATGCA
TTAGCATGACTTTTGTAACATTGTGTTTATGGTGACAGAAACCCTAATTT
TGGAGTTCAATCAGTACACACCTGGGTCACGATGGAGAAAAACAACAATC
AACAGGAAAGATCATAGAGAGGAGGGAAATGAGGCGGATGGATTTTACGG
GGGAATCAGAAAGGTTAACAATGAGGAGGAAATTAAAATGTGGAAGAGGC
TTTGGCCAGTAGAAGTATTGGAATAGAGGCATGCCCCACAGTGCCACGAT
TTGATGAACATAGAACCTATTAATGATATCCTTCTGATTAAGTGAAATTC
AGCCTTAGAGAATCTGAAAATGTGCTTCCGATTCTGTAGCATGAATGGGG
AGGGCTTATGCTTGGCGATAATTTTTTATGGGAGATAGATATTCATATTC
TAAGGCCTTTCGTTTTCATAAGATCTTAATTCATGTGAACTGCCTCCCAT
AATCCCATTGAAGTACCATATTTTGCCCCCCGTTATAAAAAATTTTAATT
GCTAATCTCCTGGCAATCGAATTGGTGTTGTGTGGAAACATGTAAAAATG
AAATAACCAAATATATATATTAA
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