DY256610

Overview
NameDY256610
Unique NameDY256610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig462 contig Ccv1_Contig462:187..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256610 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.895e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 3
Query:    3 AKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 272
            AKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    8 AKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DY256610 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.123e-21
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 3
Query:    6 KLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 269
            KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    9 KLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DY256610 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.671e-19
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 3
Query:    6 KLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 269
            K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    9 KFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DY256610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI3.895e-45100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.123e-2156.25Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI3.671e-1953.13Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AC05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256610 ID=DY256610; Name=DY256610; organism=Citrus clementina; type=EST; length=476bp
AAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCGCTCTCCATT
AGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGGACCATATCTCGGAC
TGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGTGAGAGAGGATTCTG
GGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTACAGGCCG
GAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGAGAGATGCTGTT
GAACCACAAAGTCAGGGCACACTAGGGAGTGGTGGCGCATAGCAGCAGAT
CCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAGTGATGTTGTTACAGTAG
CAATTTTGACTCACTCTTAAGTCTTTGCTGTTGTATTGATATCAACTGTT
ATTGACAACTTTTAATAGTGCATTTCCATGATTTTGTCTATTAACTTGTC
AATAAAAGTAAAGAATTCCTGTATTC
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