DY256616

Overview
NameDY256616
Unique NameDY256616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9773 contig Ccv1_Contig9773:271..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 88/162 (54.32%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 YQKGRRLFVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTDYQGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 488
            Y KGRR  VGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA +E +EEAGV G VE +L G+W+F SK+  T Y+G MFP+LV +QL  WPE++VR + WM+V +A++ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:   20 YNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178          
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.682e-42
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 3
Query:    3 YQKGRRLFVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTDYQGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEALDRLVMRLTSQQLHGKED 467
            Y KGRR  VGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA +E++EEAGV G VE +L G+W+F SK+  T Y+G+MFP+LV+++L  WPE+++R + WM V +A+  C+ WWMKEALD LV RL+   L   E+
Sbjct:   15 YNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.424e-41
Identity = 78/140 (55.71%), Postives = 109/140 (77.86%), Query Frame = 3
Query:   12 GRRLFVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTDYQGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEALDRLV 428
            G R  VGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAAL+ETIEEAGVTG +E E LG+W +KSK H+  + GYMF LLV  +   WPE  +R ++W+S+ +A++VCQ+WWM+EAL+  +
Sbjct:   58 GYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.514e-38
Identity = 81/147 (55.10%), Postives = 104/147 (70.75%), Query Frame = 3
Query:   12 GRRLFVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTDYQGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEALDRLVMRLTSQQ 449
            G R  VGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAAL+ETIEEAGVTG +E E LG+W +KSK H   + G+MFPLLV  Q   WPE   R +KW+S+++A ++CQ+ WM+EAL+  + R    Q
Sbjct:   59 GYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.996e-32
Identity = 68/147 (46.26%), Postives = 99/147 (67.35%), Query Frame = 3
Query:    3 YQKGRRLFVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEAL 416
            Y+ G RL  GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA +E +EEAGV GI+  + LG + FKSK+H  ++      +  M+ L V+++LA WPE   R++KW+++ +A + C+H WMK+AL
Sbjct:   15 YEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.250e-29
Identity = 71/175 (40.57%), Postives = 112/175 (64.00%), Query Frame = 3
Query:    3 YQKGRRLFVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS 491
            Y    RL  GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA +E +EEAGV GI+  + LG W F+SK+ + +         +GYMF L V+++LA WPE++ R ++W++V +A ++C++ WM+ AL+   +R+ +++   KEDS+   S+S
Sbjct:   15 YDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISSIS 187          
BLAST of DY256616 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.170e-27
Identity = 68/172 (39.53%), Postives = 102/172 (59.30%), Query Frame = 3
Query:    3 YQKGRRLFVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALQETIEEAGVTGIVECELLGEWNFKSKAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSKKWMSVAKAKKVCQHWWMKEALDRLVMRLTSQ-QLHGKEDSV 473
            Y    RL  GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA +E IEEAGV GI+    LG W F+SK+   +       +GYMF L V ++L +WPE+  R ++W++V +A ++C++ WM+ AL+  +  +  + +L  +E++V
Sbjct:   15 YDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182          
The following BLAST results are available for this feature:
BLAST of DY256616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH5.229e-4454.32Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH1.682e-4254.84Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH1.424e-4155.71Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD21_ARATH2.514e-3855.10Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH5.996e-3246.26Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH1.250e-2940.57Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH1.170e-2739.53Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AD10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256616 ID=DY256616; Name=DY256616; organism=Citrus clementina; type=EST; length=770bp
GTTACCAAAAAGGCCGTCGCCTATTTGTTGGATGCATACCATATAGATAT
AAATGCGTAAAACAAAGCTTGGATATTAATGAGGAGGATCTTGAAGTTCT
CGTCATCAGTTCACAGAAAGGCAAAGGGATGTTGTTCCCAAAGGGAGGCT
GGGAAATTGATGAATCCATACAAGAAGCAGCTTTACAAGAAACCATCGAG
GAAGCCGGGGTAACTGGCATCGTTGAGTGTGAATTATTGGGTGAATGGAA
TTTCAAGAGCAAAGCACACAACACTGACTATCAAGGATACATGTTCCCAT
TACTTGTTCAGGATCAATTAGCGGAGTGGCCAGAGAAGAATGTGCGAAGC
AAAAAATGGATGAGCGTGGCAAAAGCTAAAAAAGTTTGTCAGCATTGGTG
GATGAAGGAAGCATTGGATAGACTAGTAATGCGTCTAACTTCTCAACAAC
TACATGGCAAGGAAGATTCTGTAGGAACCTGTTCTTTGAGCTAGAATAGA
AAATCCCACTTGTACATAGAAAATTTTCGAAGACCAGAGGGAAGTTGCTC
TAAGACCACAAGAAGTACAGATCCAAGCGAACAAGAAACAGTGACAACAC
TGAAGGATACAGATAACGGAAGTCTGCATTTTTAATTGTTGTTTCATTTG
CTTGGTATTCTAATTCAGAAACTTCTGTGTGGGAAAATAGGAAAGGTTAG
CAGAGGCTTGTTGACAATGTTTAGAACAAACATTGGTTCTAGAAATAAAG
AATGATGAGGTTCTGATTTA
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