DY256617

Overview
NameDY256617
Unique NameDY256617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1195
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256617 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.537e-18
Identity = 58/199 (29.15%), Postives = 96/199 (48.24%), Query Frame = 3
Query:  321 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES--VVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAREACMFHN----SSDRNMSLYTDHQCGR 899
            + +R+I + L+ LG  ++   L +ESG  L  S    F   +++G WD++   L+++  +  S   +    FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +   A SR              +M+P RRL+ L+ QA+   R+ C++HN    SS  ++SL  DH C R
Sbjct:   54 DVIRLIGQHLHGLGLNQTVDLLMQESGCRLEHSSATKFRNHVMEGEWDKAENDLNELKALMHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTDRIHVLSGYLMCSHAEDLKAKAEWEGKGAGSRCRLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDSSLDSVSLLLDHVCSR 252          
BLAST of DY256617 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.969e-15
Identity = 73/285 (25.61%), Postives = 115/285 (40.35%), Query Frame = 3
Query:  141 EDDEPASKRMKLSSVE-LRGLSNGSAFREPVAGSLRDLMARPLPSEGDENVIGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES---------------------------VVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAREACMFHNSS-DRNM---SLYTDHQCGR 899
            E  EPA     LSS   L G  +     +P     + L      S+ DE+VI            R+I + L+ LG  ++   L +ESG  L       F   +++G WD++   L+++  +  S                           V++   FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +     SR              +M+P RRL+ L+ QA+   R+ C++HN+  D N+   SL  DH C R
Sbjct:   27 ESSEPAHSNGVLSSNNGLSGTGSTGPTEQPGGRKKKRL------SQADEDVI------------RLIGQHLHGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGEWDKAENDLNELKSLVHSPHAVAACRPSSGGSGSEHSPTSCPTADVIRRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHADDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSR 293          
BLAST of DY256617 vs. ExPASy Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.808e-15
Identity = 55/199 (27.64%), Postives = 88/199 (44.22%), Query Frame = 3
Query:  321 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIG-LVDE---SVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAREACMFHN----SSDRNMSLYTDHQC 893
            E +R+I + L+ +G  KS   L  ESG  L       F + +L G W ++ + L  +  L+D    + +    F++LEQK+ E LD    +DAL  LR+E+ PL    +RV +L                  +     SR              +M+  RRL  L++QA+    + C  H+    ++   +SL TDH C
Sbjct:   99 EIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLEPLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCC 297          

HSP 2 Score: 28.8758 bits (63), Expect = 2.808e-15
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  932 LQGHPDEVWFLQFSPMGKYLTSPSQ 1006
            L  H DEVWF +FSP G  L + S+
Sbjct:  310 LTDHCDEVWFCKFSPDGLKLATGSK 334          
BLAST of DY256617 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 5.730e-15
Identity = 69/252 (27.38%), Postives = 108/252 (42.86%), Query Frame = 3
Query:  210 SAFREPVAGSLRDLMARPLPSEGDENVIGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES----VVKSA--------------SFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAREACMFHNSS-DRNM---SLYTDHQCGR 899
            S+   P  GS   L  +   S+ DE+VI            R+I + L  LG  ++   L +ESG  L       F   +++G WD++   L+++  +  S    VV+ A               FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +     SR              +M+P RRL+ L+ QA+   R+ C++HN+  D N+   SL  DH C R
Sbjct:  103 SSLATPELGS--SLKKKKRLSQSDEDVI------------RLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSR 340          
BLAST of DY256617 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 7.484e-15
Identity = 59/215 (27.44%), Postives = 96/215 (44.65%), Query Frame = 3
Query:  321 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES----VVKSA--------------SFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAREACMFHNSS-DRNM---SLYTDHQCGR 899
            + +R+I + L  LG  ++   L +ESG  L       F   +++G WD++   L+++  +  S    VV+ A               FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +     SR              +M+P RRL+ L+ QA+   R+ C++HN+  D N+   SL  DH C R
Sbjct:  106 DVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSR 320          
The following BLAST results are available for this feature:
BLAST of DY256617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WDR26_DANRE5.537e-1829.15WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
WDR26_XENTR1.969e-1525.61WD repeat-containing protein 26 OS=Xenopus tropica... [more]
WDR26_DROME2.808e-1527.64WD repeat-containing protein 26 homolog OS=Drosoph... [more]
WDR26_HUMAN5.730e-1527.38WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_MOUSE7.484e-1527.44WD repeat-containing protein 26 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AE01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256617 ID=DY256617; Name=DY256617; organism=Citrus clementina; type=EST; length=1195bp
AATCCAACAGCTGTTTTCGACTTAAAAAAGGAAATTACTCATTGTGATTC
ACTGGAAGCACTTTAAGTATCATATCCTTTTGTCTTGCTTCCATTGTGAT
AATATATGGGCTGAGGGGTGCACATTTCATGGGAGGTGTAGAGGATGATG
AACCAGCCTCGAAACGCATGAAATTATCATCTGTCGAACTGAGAGGTCTT
TCAAACGGTTCCGCTTTTAGAGAGCCCGTAGCTGGGTCTTTGAGAGATTT
GATGGCTCGGCCCCTACCATCTGAAGGGGACGAAAACGTCATTGGCCCTG
CTGGAGTTATTAAACGAGTGGAATTTGTCAGAATTATTGCCAAGGCTCTA
TATTCTCTTGGTTATACAAAAAGTGGTGCTCATTTAGAGGAAGAGTCAGG
GATACCTTTGCACTCTTCCATGGTAAATCTGTTTACGCAACAAATTCTGG
ATGGCCATTGGGATGAAAGCTTGGCCACATTGTCTAAGATTGGTCTAGTA
GATGAAAGTGTTGTCAAATCTGCTTCTTTCCTGATATTGGAGCAGAAATT
TTTTGAGCTTTTGGATGCAGAGAAAGTCATGGATGCATTGAAGACATTGA
GGGCTGAAATTGCTCCTCTTTGTATAAAAAATAGTAGAGTCCGTGAACTT
TCCTCTTGTATTGTTTCTCCTCCAAAGTGCGTAGTAGTTTGTTCTCCAAA
ACAAGATATTGTGAGGGCAAAGTCCCGGCCAAAGCTGCTGGAGGAATTGC
AGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAAGGTTGGAACAT
TTAGTTGAACAGGCCCTTGTCTTTGCACGAGAGGCTTGCATGTTTCACAA
TTCCTCGGACAGGAATATGTCATTGTACACTGATCATCAGTGTGGAAGAA
ATCCAATTTCCTTCTCCGACATTGGAAAAATTTACAAGGCCACCCGGATG
AAGTTTGGTTCTTGCAATTTTCCCCCATGGGGAAATATTTAACTTCCCCA
TCCCAACAACCCATTCCACAATCCTTTTGGGAAGGTTGATTTTTAAGGGG
TGAAAGTACCATTAAAACCAAAAATTTATTCGGGGCCCCCAAAAACCCCT
TTTTCCCCTGTGTTTTTCTGGGGACCCCCTTAAAAAACCCAAACCCCCCC
CCCCCCTTTTGTTGGAAAAAAAAAAAGAAGGCGCGTTTTTAGGGC
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