DY256621

Overview
NameDY256621
Unique NameDY256621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8507 contig Ccv1_Contig8507:77..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY256621 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.197e-23
Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = 2 
Query:  272 MLEIFNKGLVNPPQELHSPASLSSSRKHNHPEEIFNEFLI-SQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 721
            ML +F + +  PP EL  P +    ++    EEI   F    Q S  + +  GN  A ++    N N +  R    + +V+C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR PYP  QV+++L+G F F+L+D KA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of DY256621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.197e-2338.41Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AE12ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256621 ID=DY256621; Name=DY256621; organism=Citrus clementina; type=EST; length=1066bp
GCGGGAGATCTCAGTCTTCTTAATTTAAATATGAACACTACGTGTATCCT
AAGCATGGAATTTCGAGTTATGGATAATGTCGCCACGTTTGATTTCATCA
GTTTCCACTATAAATATTCCATCCCCACTTTCACTTTGTATCTATTCCAG
TCCTCTTCTGTTAATTAAAACATAATCATTATCTATTGGTGAATTGTTGG
TTTATTATTTACGAGTTATAACTCTTTCTGAAGATCTTTATTTATTTTCG
TCTGAAAGAAGAAAAGATAAGATGTTGGAAATATTCAACAAAGGGTTAGT
GAATCCACCTCAAGAGCTACACAGCCCAGCTTCGTTGAGTTCATCAAGAA
AGCATAACCATCCTGAGGAGATTTTCAATGAATTTTTAATTTCGCAGTCT
TCTAATGCTTTTTCAATCAACTTCGGAAATGCAGCTGCTCTCGCTTATGT
GCCACCAGAAAATCCCAACTCCGTCTCCCAAAGGTGGTTTTGTGGCTTGC
ATAACGTATACTGCATGTTCATGGGGAGCTTAAACAACTTGAGCAGCCTC
AACAAACAATATGGGCTTTCAAAAGGCTCCAATGAGGCCATGTTTGTTAT
TGAAGCATACCGGACCCTCCGTGATCGCGGCCCATACCCGGCTCATCAGG
TCCTGCGAGATCTTGATGGCAGCTTTGGCTTTGTGCTCTATGATTGCAAG
GCTGGAACTATATTTGCAGCACTGGATGCTGATGAAGGAGTGCGACTCTT
CTGGGGCATTGCAGCTGATGGGTCCGTGGTCATTTCTGACAATTTGGAGC
TCATAAAAGCAAGTTGTGCCAAATCATTTGCACCGTTTCCAGCCGGGTGC
ATGTTTCACAGCGAGCAAGGGCTGATGAGCTTTGAGCATCCAACGAGGGA
GATGAAAGCAATGCCTAGAATTGACGGTGAGGGAGTAATGTGTGGGGCTA
ACTTTCAAGTTGATGTTCAGTCCAGGATGAAAAGCCAGCCACGTGTTTGC
AGCAAACCAAAATGGGCATTGTCGGGCTCCCATGCCCTGGGCCTAACCTA
AGGCGCAAGCCCAAAA
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