DY256622

Overview
NameDY256622
Unique NameDY256622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9735 contig Ccv1_Contig9735:4..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256622 vs. ExPASy Swiss-Prot
Match: NPAL3_MOUSE (NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 48/196 (24.49%), Postives = 91/196 (46.43%), Query Frame = 1
Query:    1 GNIFLVFFGNHQSPVYTPEQFAKKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFHIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESK 582
            G   LV F  +     T E  A+   +  FL+Y L  I++F + +Y Y  R   +++ +                 ++   +GS +V+  K++S +L L++    QL     Y M +   +TA +    L+E   ++D+ LI  + +I  T+ +I  G +++ ++   +AL   MF LG    F+G+ L+  +  K
Sbjct:  151 GTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNANSIVVI----------------LLLVALLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVMFVCMVATAIYQATFLSEASQIYDSSLIASVGYILSTTAAITAGAIFYLDFLGEEALHICMFALGCLIAFLGVFLITRNRKK 330          
BLAST of DY256622 vs. ExPASy Swiss-Prot
Match: NPAL3_PONAB (NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 60/271 (22.14%), Postives = 112/271 (41.33%), Query Frame = 1
Query:    1 GNIFLVFFGNHQSPVYTPEQFAKKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFHIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGEXXXXXXXXXXXXXXXXXXXXRLILPSEDAQSKEPKPFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAV 807
            G   LV F  +     T E   +   +  FL+Y L  I++F + +Y Y  +   N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y M +   +TA +  A L++   ++D+ LI  + +I  T+ +I  G +++ ++   D L   MF LG    F+G+ L+  +  K                          +P E   S +  P +Q M  K   M  + +   S S G  E++ N S +
Sbjct:  147 GTYLLVTFAPNSREKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNANNIVVI----------------LLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLIAFLGVFLITRNRKKA-------------------------IPFEPYISMDAMPGMQNMHDK--GMTVQPELKASFSYGALENNDNISEI 374          
BLAST of DY256622 vs. ExPASy Swiss-Prot
Match: NPAL3_HUMAN (NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 46/196 (23.47%), Postives = 90/196 (45.92%), Query Frame = 1
Query:    1 GNIFLVFFGNHQSPVYTPEQFAKKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFHIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESK 582
            G   LV F  +     T E   +   +  FL+Y L  I++F + +Y Y  +   N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y M +   +TA +  A L++   ++D+ LI  + +I  T+ +I  G +++ ++   D L   MF LG    F+G+ L+  +  K
Sbjct:  147 GTYLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNANNIVVI----------------LLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLIAFLGVFLITRNRKK 326          
The following BLAST results are available for this feature:
BLAST of DY256622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPAL3_MOUSE3.457e-1124.49NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2... [more]
NPAL3_PONAB4.515e-1122.14NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2... [more]
NPAL3_HUMAN5.897e-1123.47NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256622 ID=DY256622; Name=DY256622; organism=Citrus clementina; type=EST; length=917bp
GGGAACATTTTTCTAGTTTTCTTTGGAAATCACCAGTCACCTGTTTACAC
ACCGGAACAGTTTGCAAAAAAATACAGCAACATCACATTCCTTGTTTACT
GTCTAATTTTGATCTTTATCGTTGCTATATATCACTACATCTACAGGAAA
GGAGAGAATCTACTTGCTGTTTCTGGACAGGACAATAGATATTGGCGTAT
GCTGCTTCCTTTTTCATATGCCATAGTTTCAGGTGCTGTGGGATCATTCT
CAGTGTTGTTTGCAAAATCTCTCTCTAACCTCCTGAGGTTGGCCATGTCT
AATGGGTATCAGTTGCACAGTTGGTTCACATACTCGATGCTCCTGTTGTT
TTTTAGCACAGCTGGGTTTTGGATGGCAAGGTTGAATGAAGGACTGTCGC
TGTTTGATGCAATCCTTATAGTGCCTATGTTTCACATTGCTTGGACTTCT
TTCTCTATCTGTACAGGATTTGTATACTTTCAAGAGTATCAGGTATTCGA
TGCATTGAGGGCAACGATGTTCATACTAGGAACGGCATCTGTGTTCATAG
GGATTTCTTTGCTTGCGCCTGATGAGTCTAAAGGTGGTGAGGTTAAAGAC
GATTCATCTTTAGTTTCGGTAATGTCTTCAAGTATTTCAACTGAAGTGGA
CAGATTGATCCTGCCATCTGAGGATGCACAAAGTAAAGAGCCAAAACCAT
TTGTGCAAGGAATGTCGATGAAAATTTCAGATATGATGGCCAAGGCAAAA
ACTGCTTGTTCAATGTCATTAGGCCTCGGAGAGGACTCAATCAATGCATC
CGCAGTTCTTGTTATGCCTATGGAATCCTCAAAGATAATGGGTTTTAGAA
GAAACGGGTTTGACACGGCTAAACCTTTTCAACGTGAAAAATTCGGGTTC
CGATTGGAATGGCATTT
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