DY256630

Overview
NameDY256630
Unique NameDY256630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9740 contig Ccv1_Contig9740:6..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256630 vs. ExPASy Swiss-Prot
Match: NEK6_ARATH (Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 2
Query:   56 PAPRKLLVNPKSDP---QHHQVLQKELPVISEAATFSNKEEHGMVPRCCLHSIANKNLSPICASCGNNERAIENFLRLPKQTIKEDIQELIGASNDSLMSTITLLHSQETRIKMDPQSKKRAEALESLLEICANLLRQERLDDLAGVLRPFGDEAVSSRETAIWLTKSLMNIQK 568
            P   +LL +P   P   Q   +     PV+S++   +N+   G+ P+           +PI  +  + E   +N       +  +D +    +   S++ST+TLL   +   K  P+S++RAEALESLLE+CA LLRQE+ D+L GVL+PFGDE VSSRETAIWLTKSLMN+++
Sbjct:  246 PTAAELLRHPHLQPYLAQCQNLSPVFKPVVSKSEHNTNENRTGLPPK------TKSAKTPIKHNQESEETEKKN---KDTSSSSKDKERPAKSQEMSVISTLTLLREFQ---KKSPKSEERAEALESLLELCAGLLRQEKFDELEGVLKPFGDETVSSRETAIWLTKSLMNVKR 407          
BLAST of DY256630 vs. ExPASy Swiss-Prot
Match: NEK6_ORYSJ (Serine/threonine-protein kinase Nek6 OS=Oryza sativa subsp. japonica GN=NEK6 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  317 IGASNDSLMSTITLLHSQETRIKMDPQS--KKRAEALESLLEICANLLRQERLDDLAGVLRPFGDEAVSSRETAIWLTKSLMNIQK 568
            I     S  S + L HS  T  + D  +  ++RA+ALESLLE+CA LL+QERL++LAGVLRPFG+ AVSSRETAIWLTKSLM   K
Sbjct:  441 IVTEESSPKSAVKLAHSDSTPAEWDHLNIVQQRADALESLLELCAKLLKQERLEELAGVLRPFGEGAVSSRETAIWLTKSLMTPPK 526          
BLAST of DY256630 vs. ExPASy Swiss-Prot
Match: NEK7_ARATH (Serine/threonine-protein kinase Nek7 OS=Arabidopsis thaliana GN=NEK7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.018e-13
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  296 KEDIQELIGASNDSLMSTITLLHSQETRIKMDPQSKKRAEALESLLEICANLLRQERLDDLAGVLRPFGDEAVSSRETAIWLTKSLMNIQK 568
            K  + +L  +   S++S +T L          PQSK+RA+ALE LLE CA L++QE+ ++LAG+L PFG++ VS+R+TAIW  K+L++  K
Sbjct:  484 KAKMVKLTASEMSSVLSKLTKLGP--------PQSKERADALECLLEKCAGLVKQEKYEELAGLLTPFGEDGVSARDTAIWFAKTLLSSDK 566          
BLAST of DY256630 vs. ExPASy Swiss-Prot
Match: NEK4_ARATH (Serine/threonine-protein kinase Nek4 OS=Arabidopsis thaliana GN=NEK4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:  401 KKRAEALESLLEICANLLRQERLDDLAGVLRPFGDEAVSSRETAIWLTKS 550
            ++RAEALE LLE  A LL+QER D+L  +L+PFG E VSSRETAIWLTKS
Sbjct:  500 QQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGAERVSSRETAIWLTKS 549          
BLAST of DY256630 vs. ExPASy Swiss-Prot
Match: NEK1_ORYSJ (Serine/threonine-protein kinase Nek1 OS=Oryza sativa subsp. japonica GN=NEK1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  320 GASNDSLMSTITLLHSQETRIKMDPQS--KKRAEALESLLEICANLLRQERLDDLAGVLRPFGDEAVSSRETAIWLTKS 550
            G +N +  ++     S+ TR +    S  ++RAEALE LLE  A LL+QER D+L  +L+PFG E VS RETAIWLTKS
Sbjct:  515 GRNNAAAAASSRAGSSESTRQRRFDTSSYQQRAEALEGLLEFSAQLLQQERYDELGVLLKPFGPEKVSPRETAIWLTKS 593          
The following BLAST results are available for this feature:
BLAST of DY256630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NEK6_ARATH1.568e-2239.66Serine/threonine-protein kinase Nek6 OS=Arabidopsi... [more]
NEK6_ORYSJ2.343e-1859.30Serine/threonine-protein kinase Nek6 OS=Oryza sati... [more]
NEK7_ARATH1.018e-1343.96Serine/threonine-protein kinase Nek7 OS=Arabidopsi... [more]
NEK4_ARATH2.124e-1170.00Serine/threonine-protein kinase Nek4 OS=Arabidopsi... [more]
NEK1_ORYSJ3.622e-1150.63Serine/threonine-protein kinase Nek1 OS=Oryza sati... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1AG03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256630 ID=DY256630; Name=DY256630; organism=Citrus clementina; type=EST; length=800bp
GTCACCTGCCAAGTTCAGCAGTGGCAAAGAAGTGAAAGGTGGAAAGGCAA
TCCCACCAGCACCAAGGAAGTTATTAGTGAACCCGAAATCCGACCCTCAG
CATCACCAGGTATTGCAGAAGGAACTGCCAGTTATTAGTGAAGCTGCGAC
ATTCAGTAACAAGGAAGAACATGGTATGGTTCCACGGTGCTGTTTACATT
CAATAGCAAACAAAAACTTGAGTCCAATATGTGCTTCATGTGGGAACAAC
GAAAGAGCAATAGAGAATTTTCTCAGACTTCCAAAGCAAACAATAAAAGA
AGATATTCAAGAACTGATTGGAGCATCAAATGACTCATTGATGAGTACAA
TAACATTGTTGCATAGTCAGGAAACAAGGATAAAAATGGATCCACAGAGC
AAGAAAAGAGCAGAGGCTCTGGAGTCACTACTAGAGATTTGTGCAAATTT
GCTTAGACAGGAAAGGTTGGATGATCTTGCTGGTGTATTGAGACCATTTG
GTGATGAAGCTGTGTCATCTAGAGAAACAGCAATTTGGTTGACAAAGAGC
CTAATGAATATTCAGAAAAATGGCGCCTGAGGTAATTGATTAGCAAGGAG
GCCATGATCAATCTGACGCTTATACCTTGTAAATGAAACCCAAAAGTGTT
GTAAAGTCTTGACATACAATTGGTTTATTGTGTTAACAAAATTACTCCAC
AGAAGTGAATTTGATTGAGTAAAACCGAGTAGATTAAATATTGAGTCTAT
GAGATACAACTTCAAGTAATTAGATATAAATGATCTGGATTTTGAATCTT
back to top