DY256638

Overview
NameDY256638
Unique NameDY256638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length965
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15112 contig Ccv1_Contig15112:37..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT1_ARATH (Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 2.786e-83
Identity = 161/216 (74.54%), Postives = 184/216 (85.19%), Query Frame = 3
Query:   39 APSSVRLPLNRSQNYRIALPPLHSTVSGDSTQPQQMASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 686
            AP S+RL  +RS         L    S  +++  +MA+ DV  QDPRIA I+S+IRVIPDFPKPGIMFQDITTLLLDT+AF+DTI LFV+RYKDK ISVVAG+EARGFIFGPPIALAIGAKFVPMRKPKKLPG+VISEEYSLEYG D +EMHVGAV+ GERA+I+DDL+ATGGTL+AAIRLLERVGV +VECACVIELPELKG+E+LGE  LFVLV
Sbjct:   32 APPSIRLSNHRSTT------SLRLFSSAAASRDSEMATEDV--QDPRIAKIASSIRVIPDFPKPGIMFQDITTLLLDTEAFKDTIALFVDRYKDKGISVVAGVEARGFIFGPPIALAIGAKFVPMRKPKKLPGKVISEEYSLEYGTDTIEMHVGAVEPGERAIIIDDLIATGGTLAAAIRLLERVGVKIVECACVIELPELKGKEKLGETSLFVLV 239          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT1_WHEAT (Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.221e-75
Identity = 138/174 (79.31%), Postives = 157/174 (90.23%), Query Frame = 3
Query:  165 AQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 686
            A D R+  I+S+IR IP+FPKPGI+FQDITTLLLD +AFRDT DLFVERYKDK+I+VVAG+EARGFIFGPPIALAIGAKFVP+RKPKKLPGEVISEEYSLEYG D +EMHVGAVQ  +R LIVDDL+ATGGTL AA +L+ERVG  VVECACVIELPELKGR++LG+ P+FVLV
Sbjct:    2 ASDGRVERIASSIRAIPNFPKPGILFQDITTLLLDPQAFRDTTDLFVERYKDKDITVVAGVEARGFIFGPPIALAIGAKFVPIRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVQPNDRVLIVDDLIATGGTLCAAAKLIERVGAKVVECACVIELPELKGRDKLGDMPVFVLV 175          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT2_ARATH (Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.369e-66
Identity = 126/172 (73.26%), Postives = 145/172 (84.30%), Query Frame = 3
Query:  171 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 686
            DPR+  IS AIRVIP FPK GIMFQDITTLLLD  AF+  +D+FV+RYK  NIS+VAG+EARGFIFGPPIALAIGAKFVP+RKP KLPG VISEEY LEYG+D +EM V AV++ ERALI+DDLVATGGTLSA+I LLER G  VVECACV+ LP+ KG+ +L  KPL+VLV
Sbjct:   11 DPRLKAISDAIRVIPHFPKTGIMFQDITTLLLDPVAFKHVVDIFVDRYKHMNISLVAGVEARGFIFGPPIALAIGAKFVPLRKPGKLPGRVISEEYELEYGRDCLEMSVEAVKSEERALIIDDLVATGGTLSASINLLERAGAEVVECACVVGLPKFKGQCKLKGKPLYVLV 182          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_LEPBL (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=apt PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.801e-48
Identity = 91/168 (54.17%), Postives = 126/168 (75.00%), Query Frame = 3
Query:  189 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK---PLFVL 683
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+DK I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G ++L EK   P+F +
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQDKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVSEEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEKLEVPVFAI 171          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_LEPBJ (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=apt PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.801e-48
Identity = 91/168 (54.17%), Postives = 126/168 (75.00%), Query Frame = 3
Query:  189 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK---PLFVL 683
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+DK I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G ++L EK   P+F +
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQDKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVSEEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEKLEVPVFAI 171          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_SHELP (Adenine phosphoribosyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=apt PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.106e-47
Identity = 90/169 (53.25%), Postives = 124/169 (73.37%), Query Frame = 3
Query:  177 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 683
            ++A I  +I+ IPD+PKPGIMF+D+T+L+ D  A++ TI LFVERYKD  ++ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D++E+H  A++ G++ L+VDDL+ATGGT+ A ++L+ ++G  V   A VI LPEL G  RL E  L ++
Sbjct:    5 KLALIKQSIKTIPDYPKPGIMFRDVTSLMEDPAAYQATIALFVERYKDLGVTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDMLEIHTDAIKPGDKVLVVDDLLATGGTIEATVKLIRQLGGEVEHAAFVISLPELGGEHRLAEMGLSLM 173          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_LEPIN (Adenine phosphoribosyltransferase OS=Leptospira interrogans GN=apt PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.167e-47
Identity = 86/160 (53.75%), Postives = 122/160 (76.25%), Query Frame = 3
Query:  189 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 668
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  ++Q G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L GR++L E+
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVSEEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIYEAGVIIDLPDLGGRKKLQEE 163          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_LEPIC (Adenine phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=apt PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.167e-47
Identity = 86/160 (53.75%), Postives = 122/160 (76.25%), Query Frame = 3
Query:  189 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 668
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  ++Q G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L GR++L E+
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVSEEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIYEAGVIIDLPDLGGRKKLQEE 163          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_PSYIN (Adenine phosphoribosyltransferase OS=Psychromonas ingrahamii (strain 37) GN=apt PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.068e-46
Identity = 93/162 (57.41%), Postives = 118/162 (72.84%), Query Frame = 3
Query:  174 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 659
            P +  I + I+ IPD+P PGIMF+DIT+L+ +  AF  TI+L VERYKD+NIS V G EARGFIFG P+A AIGA FVP+RKP KLP   + E Y LEYG D + +H  A++  ER L+VDDL+ATGGT  A+I+L+ R G  V+E A VIELP LKG ++L
Sbjct:    4 PTLEEIKNCIKSIPDYPIPGIMFRDITSLIENGAAFSATINLLVERYKDQNISKVVGTEARGFIFGAPLAAAIGAGFVPVRKPGKLPRTTVHENYELEYGTDSLHIHSDAIKKNERVLLVDDLLATGGTAEASIKLIHRSGGIVIESAFVIELPALKGAQKL 165          
BLAST of DY256638 vs. ExPASy Swiss-Prot
Match: APT_HAEIN (Adenine phosphoribosyltransferase OS=Haemophilus influenzae GN=apt PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.306e-45
Identity = 90/157 (57.32%), Postives = 118/157 (75.16%), Query Frame = 3
Query:  189 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 659
            I S+I+ IP++PK GI+F+DITTLL    AF+ TIDL VE+Y+DK I+ V G E+RGFIFG P+ALA+G  F  +RKPKKLP E IS+ Y LEYG+D +EMHV A+  G+  LI+DDL+ATGGT+ A ++L++R+G  V   A VI LPEL G +RL
Sbjct:    8 IKSSIKSIPNYPKEGIIFRDITTLLEVPAAFKATIDLIVEQYRDKGITKVLGTESRGFIFGAPVALALGLPFELVRKPKKLPRETISQSYQLEYGQDTLEMHVDAISEGDNVLIIDDLLATGGTVEATVKLVQRLGGAVKHAAFVINLPELGGEKRL 164          
The following BLAST results are available for this feature:
BLAST of DY256638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT1_ARATH2.786e-8374.54Adenine phosphoribosyltransferase 1 OS=Arabidopsis... [more]
APT1_WHEAT6.221e-7579.31Adenine phosphoribosyltransferase 1 OS=Triticum ae... [more]
APT2_ARATH2.369e-6673.26Adenine phosphoribosyltransferase 2 OS=Arabidopsis... [more]
APT_LEPBL3.801e-4854.17Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_LEPBJ3.801e-4854.17Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_SHELP1.106e-4753.25Adenine phosphoribosyltransferase OS=Shewanella lo... [more]
APT_LEPIN7.167e-4753.75Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_LEPIC7.167e-4753.75Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_PSYIN6.068e-4657.41Adenine phosphoribosyltransferase OS=Psychromonas ... [more]
APT_HAEIN2.306e-4557.32Adenine phosphoribosyltransferase OS=Haemophilus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1AH04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256638 ID=DY256638; Name=DY256638; organism=Citrus clementina; type=EST; length=965bp
GATCTCAAACGCAGACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCT
GTTCGCCTACCGTTGAACCGCTCGCAAAATTACAGAATTGCACTCCCTCC
TCTGCATTCCACCGTGAGTGGTGACTCGACGCAACCTCAACAAATGGCTT
CAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCA
ATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATTATGTTTCAAGATAT
CACAACATTGCTTCTTGATACCAAGGCTTTTAGAGATACTATTGATCTGT
TCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAA
GCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAA
GTTTGTTCCTATGAGGAAACCTAAAAAGCTTCCTGGGGAGGTTATTTCCG
AAGAGTATTCCTTGGAATATGGAAAAGATGTAATGGAGATGCATGTAGGT
GCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAAC
TGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGC
ATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGG
GAACGGCTGGGAGAGAAACCACTATTTGTTCTTGTAAGCTAAACTTGACC
TCAGGTTATGGTTTAAATGCAATGTTTGTGGACCATATGGGTTTCTAGTC
GCTCGGGCTCTGCTCAAAGCTTGAGAACTTCATAAAACCATCTGGTAATA
TAAGAGCAGTTTCATTGGCTTTTTATTTTATTAAGACCTTGGGAAAAAAA
TGTTGGGGAAACTGGGTTCTGTCTGCTATTGTTGGGTTTAAAAATGATAG
GCTTATGAAAAAATCCATCCTCCCGAAAACAGCTGTATTTGATGCTTTTC
AATTATCTGGAAATT
back to top