DY256641

Overview
NameDY256641
Unique NameDY256641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10632 contig Ccv1_Contig10632:606..1235. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RNF38_HUMAN (RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  149 DPDELSYEELLALGEVVG-SESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 433
            D +  +YE LL L E +G ++ RGL+   +  LP+  +     Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  414 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQS-EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 508          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  143 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 433
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +   + Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  328 DVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADAS 425          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  143 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 433
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +     Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  344 DVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQS-EQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADAS 441          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RNF38_MOUSE (RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  149 DPDELSYEELLALGEVVG-SESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 433
            D +  +YE LL L E +G ++ RGL+   +  LP+  +     Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  417 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQS-EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADAS 511          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  143 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 433
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +   + Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  246 DVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 343          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  143 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 433
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +   + Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  303 DVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 400          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase rnf12-B OS=Xenopus laevis GN=rnf12-B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 2
Query:  161 LSYEELLALGEVVGSESRGLSADTLATLPTVNYKAGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGH 445
            LS  +   L E    + RGL+ + +  L T NY     +N +  +C +C  +Y +G  L  L C H YH  CI+ WL  N  CP+C   V  +G+
Sbjct:  662 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNY----GENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGN 752          
BLAST of DY256641 vs. ExPASy Swiss-Prot
Match: RN165_HUMAN (RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  164 SYEELLALGEVVGSESRGLSADTLA--TLPTVNYKAGTSQNG-----------SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 436
            SYEELL L + +G+ +RG   +T+   T P   YK    Q+G           +++ C IC    EDGE +  L C H +H  C++ WL ++K CP+C  ++ T
Sbjct:  238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPH-KYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340          
The following BLAST results are available for this feature:
BLAST of DY256641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RNF38_HUMAN6.625e-1436.46RING finger protein 38 OS=Homo sapiens GN=RNF38 PE... [more]
RNF44_HUMAN1.476e-1337.37RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
RNF44_DANRE1.476e-1337.37RING finger protein 44 OS=Danio rerio GN=rnf44 PE=... [more]
RNF38_MOUSE1.476e-1336.46RING finger protein 38 OS=Mus musculus GN=Rnf38 PE... [more]
RNF44_RAT1.928e-1337.37RING finger protein 44 OS=Rattus norvegicus GN=Rnf... [more]
RNF44_MOUSE1.928e-1337.37RING finger protein 44 OS=Mus musculus GN=Rnf44 PE... [more]
RF12B_XENLA4.019e-1133.68E3 ubiquitin-protein ligase rnf12-B OS=Xenopus lae... [more]
RN165_HUMAN8.954e-1134.62RING finger protein 165 OS=Homo sapiens GN=RNF165 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AH12ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256641 ID=DY256641; Name=DY256641; organism=Citrus clementina; type=EST; length=630bp
AAGTGATGAGGCTTATGCATTAGCTCTACAGGACGCTGATGAAAGAGACA
TGGCTGCTAGGTTGTTGGCTCTTGCTGAAATCCATGACCGAGAAATTGAG
GACCCAGAGGATCATGGCGGTCACTCTCAGGATACATGGGAGGAGGTTGA
TCCGGATGAGCTCTCATATGAGGAATTGCTTGCATTGGGTGAAGTGGTTG
GAAGTGAGAGTAGAGGTCTATCAGCTGATACACTTGCCACTTTGCCTACA
GTAAATTACAAGGCAGGAACCAGTCAAAATGGAAGCAATGATTCCTGTGT
TATTTGTCGTTTGGACTATGAGGATGGTGAGACCTTGACTGTGCTTTCTT
GCAAACACTCGTACCATTCTGAGTGCATAAACAATTGGTTGAAAATAAAC
AAGGTCTGTCCTGTTTGCAGTGCCGAGGTCTCCACTTCTGGGCACAGTTA
GCATATCGATGAAGTCTCCTTCTCTGTTAGACAAAGAAAGAAAAAAGTCC
TGCACTGCTTATACTGATACTGAATGATATAATTGCGGTGCTTCTTTAAT
CCTATGTAGACTAAGGAAAAAAAGACACCTGCTTGTATACAATTCTTTAA
ATGAAATATTTCACGCCCACCTTTGGAATT
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