DY256658

Overview
NameDY256658
Unique NameDY256658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256658_ssr28 microsatellite DY256658_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 5.361e-51
Identity = 101/173 (58.38%), Postives = 128/173 (73.99%), Query Frame = 3
Query:  237 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEALDRLVMRLTSQQLHDKEDSAGTCSL 755
            L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV EQL  WPE++VR R WM+  EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:    9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178          
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.011e-49
Identity = 99/166 (59.64%), Postives = 125/166 (75.30%), Query Frame = 3
Query:  237 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEALDRLVMRLTSQQLHDKED 734
            LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+E+L  WPE+++R R WM   EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:    4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.554e-49
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:  228 VGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEALDRLV 695
            V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV ++   WPE  +R R+W+S  EAR+VCQ+WWM+EAL+  +
Sbjct:   40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.108e-47
Identity = 101/180 (56.11%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  183 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEALDRLVMRLTSQQ 716
            +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV +Q   WPE   R RKW+S +EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.674e-36
Identity = 79/159 (49.69%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  234 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEAL 683
            +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+E+LA WPE   R+RKW++  EA + C+H WMK+AL
Sbjct:    3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.673e-34
Identity = 81/189 (42.86%), Postives = 120/189 (63.49%), Query Frame = 3
Query:  228 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEALDRLVMRLTSQQLHDKEDSAGTCSLS 758
            + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+E+LA WPE++ R R+W++  EA ++C++ WM+ AL+   +R+ +++   KEDS    S+S
Sbjct:    1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISSIS 187          
BLAST of DY256658 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.574e-32
Identity = 78/185 (42.16%), Postives = 106/185 (57.30%), Query Frame = 3
Query:  237 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQEQLAEWPEKNVRSRKWMSAAEARKVCQHWWMKEALDRLV--------MRLTSQQLHD 725
            L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V E+L +WPE+  R R+W++  EA ++C++ WM+ AL+  +        +R   + +HD
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETVHD 184          
The following BLAST results are available for this feature:
BLAST of DY256658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH5.361e-5158.38Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH1.011e-4959.64Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH6.554e-4960.13Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD21_ARATH2.108e-4756.11Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH1.674e-3649.69Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH2.673e-3442.86Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH5.574e-3242.16Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1BE05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256658 ID=DY256658; Name=DY256658; organism=Citrus clementina; type=EST; length=1044bp
GACTCAGGATAAGAAAGAAGCTCTCACCTCTCTCTCTCTCGTCTCAATAT
TAAAAGTTTACTTTTGCTTTCAGCTCGTTCAGACGTTAATTATTTTTCAT
CTGAAAGATTGTCTTTCAGCTCCTTTTGCTTTTTGCTGCTGCGAATATTC
CGTAACTAGAAAATAAAACTATGGTGGCTTTGGTAGCTCAAGAAACTATT
GTATCTCTTGTAACTCCTGAAAATGTTGTGGGCAATTTGGTTTCTCGCAC
CGGCAGGCATTTGCAGCGTTACCAAAAAGGCCGTCGCCAAGTTGTTGGAT
GCATACCATATAGATATAAATGTGTAAAACAAAGCTTGGATATTAATGAG
GAGGATCTTGAAGTTCTCGTCATCAGTTCACAGAAAGGCAAAGGGATGTT
ATTCCCAAAGGGAGGCTGGGAAATTGATGAATCCATACAAGAAGCAGCTT
TACGAGAAACCATCGAGGAAGCCGGGGTAACTGGCATCGTTGAGTGTGAA
TTATTGGGTGAATGGAATTTCAAGAGCAGAGCACACAACACTGACTATCA
AGGATACATGTTCCCATTACTTGTTCAGGAGCAATTAGCGGAGTGGCCAG
AGAAGAATGTCCGAAGCAGAAAATGGATGAGCGCAGCAGAAGCTCGAAAA
GTTTGTCAGCATTGGTGGATGAAGGAAGCATTGGATAGACTAGTAATGCG
TCTAACTTCTCAACAACTACATGACAAGGAAGATTCTGCAGGAACCTGTT
CTTTGAGCTAGAATAGAAAATCCCACTTGTACATAGAAAATTTTCGAAGA
CCAGAGGGAAGTTGCTCTAAGACCACAAAAAGTACAGATCCAAGCGGACA
AAAAACAGTGACAACACTGAAGGATACAGATAACGGAAGTCTGCATTTTT
AGTTGTTGTTTTCTTTGCTTGGGATTCCTATTTCCAAAACTCTGTGTGGG
GAAAAAAGAAAAAGGTTACAGAAGGCTTTGGTGACCATGGTTTTGAACAA
CCATTGGGTTCAAAAAAAAAAAGAAGGAGAAGGGTTCTGAATTT
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