DY256659

Overview
NameDY256659
Unique NameDY256659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9774 contig Ccv1_Contig9774:3..1308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.123e-51
Identity = 89/155 (57.42%), Postives = 117/155 (75.48%), Query Frame = 2
Query:    2 SIRNCPVFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 466
            SIRNCP FG+A+LA +GKLCPQL+ +DL GL GIT+ G   L++S    LVK+N SGC NLTD V+ A+   +  TLE+LN+DGC  ITDASLV+I  NC  LS LD+SKCAI+D GI AL+ +++L LQ+LS++ CS V++KS+PA+  LG TL
Sbjct:  447 SIRNCPGFGDANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTL 598          

HSP 2 Score: 43.1282 bits (100), Expect = 2.123e-51
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1
Query:  466 VGLNLQNCNSINSSTVARLVESLWRCDILS 555
            +GLNLQ C SI++STV  LVE L++CDILS
Sbjct:  599 LGLNLQQCRSISNSTVDFLVERLYKCDILS 628          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.166e-40
Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 2
Query:    2 SIRNCPVFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 466
            SIR CP FG+ASLA LGK C QLQ V+L GL G+TD G+  LL+S   GLVKVNLS C+N++D  V A++  H  TLE LNLDGC+ IT+ASLVA+  NC  ++ LD+S   ++D GI AL S    LNLQVLS+  CS +++KS   ++KLG+TL
Sbjct:  438 SIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTL 593          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 6.032e-13
Identity = 53/151 (35.10%), Postives = 89/151 (58.94%), Query Frame = 2
Query:    5 IRNCPVFGNASLAMLGKLCPQLQHVDLSGLY----GITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPA 442
            +R+C +  + +L  L K C +L+ ++L         IT  GI  +  SC + L +++L GC ++TDE VLALA L+ + L++++L GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ +++  C  +++K++ A
Sbjct:   68 LRSCNI-SDVALQHLCK-CRKLKALNLKSCREHRNSITSEGIKAVASSC-SDLHEISLKGCCSVTDEGVLALA-LNCQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQVSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEA 214          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.032e-13
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 2
Query:    5 IRNCPVFGNASLAMLGKLCPQLQHVDLSGLYG----ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 445
            +R+C +  +A+L  L   C +L+ ++L+   G    +T  GI  +  SC   L + +L  C NLTDE V+ALA L+ + L+++NL GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ + +  C  +++ ++ A+
Sbjct:   68 LRSCDI-SDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKVVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAV 215          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: AMN1_HUMAN (Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 1.755e-12
Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 2
Query:    5 IRNCPVFGNASLAMLGKLCPQLQHVDLSGLYG----ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 445
            +R+C +  +A+L  L   C +L+ ++L+   G    +T  GI  +  SC   L + +L  C NLTDE V+ALA L+ + L++++L GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ + +  C  +++ ++ A+
Sbjct:   68 LRSCDI-SDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKAVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAV 215          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: AMN1_BOVIN (Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.755e-12
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    5 IRNCPVFGNASLAMLGKLCPQLQHVDLSGL----YGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 445
            +R+C +   A L +    C +L+ ++L         IT  GI  +  SC   L + +L  C NLTDE VLALA L+   L++++L GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ + +  C  ++++++ A+
Sbjct:   68 LRSCDISDTALLHLCN--CRKLKKLNLKSSKENRISITSKGIKAVASSCSY-LHEASLKRCCNLTDEGVLALA-LNCRLLKIIDLGGCLGITDVSLQALGENCAFLQCVDFSATQVSDHGVVALVSGPCAKKLEEIHMGHCVNLTDEAVEAV 215          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: FBL4_ARATH (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.138e-11
Identity = 49/156 (31.41%), Postives = 80/156 (51.28%), Query Frame = 2
Query:    5 IRNCPVFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLWD 472
            ++ C V G+  LA +GK C QL+ ++L    G+TDVG+  L+  C   L  + ++    +TD + L     H + LE+L LD    I D  L+A+   C  L  L +   ++TD+  +A+      +L+ L+L S    ++K M A+ K  K L D
Sbjct:  173 LQGCYV-GDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITD-LSLEAVGSHCKLLEVLYLDS-EYIHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGEL-CTSLERLALYSFQHFTDKGMRAIGKGSKKLKD 324          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: FBL3_ARATH (F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.138e-11
Identity = 48/149 (32.21%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   14 CPVFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLG 457
            C    +  L+ +G  C  L+ +DL    GITDVGI  + + C   L  +N+S C ++TD+ +++L++     L+     GC  IT   L AI   C  L+ +D+ KC +I D G+ AL+H  Q NL+ +++S  + V+   + +L  +G
Sbjct:  441 CLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGC-IHLETINISYCQDITDKSLVSLSK--CSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGLLALAHFSQ-NLKQINVSD-TAVTEVGLLSLANIG 584          
BLAST of DY256659 vs. ExPASy Swiss-Prot
Match: GRRA_EMENI (SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans GN=grrA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 40/145 (27.59%), Postives = 85/145 (58.62%), Query Frame = 2
Query:    2 SIRNCPVFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKS 433
            ++ NC    +  ++ L      LQ +D+S L  +TD  +F + E+C   L  +N++GC+ +TD+ ++A+++ +   L+ L L+G  ++TD ++++   NC  +  +D+ +C  +T+  ++AL    Q NL+ L L+ C+E+ + +
Sbjct:  168 TLTNCRKLTDIGVSDLVVGSRHLQALDVSELRSLTDHTLFKVAENCNR-LQGLNITGCVKVTDDSLIAVSQ-NCRLLKRLKLNGVSQVTDKAILSFAQNCPSILEIDLQECKLVTNQSVTALMTTLQ-NLRELRLAHCTEIDDSA 309          
The following BLAST results are available for this feature:
BLAST of DY256659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EBF1_ARATH2.123e-5157.42EIN3-binding F-box protein 1 OS=Arabidopsis thalia... [more]
EBF2_ARATH1.166e-4055.13EIN3-binding F-box protein 2 OS=Arabidopsis thalia... [more]
AMN1_RAT6.032e-1335.10Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 ... [more]
AMN1_PONAB6.032e-1334.87Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 ... [more]
AMN1_HUMAN1.755e-1234.21Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 ... [more]
AMN1_BOVIN1.755e-1234.21Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV... [more]
FBL4_ARATH1.138e-1131.41F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana... [more]
FBL3_ARATH1.138e-1132.21F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana... [more]
GRRA_EMENI7.374e-1127.59SCF E3 ubiquitin ligase complex F-box protein grrA... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1BE07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256659 ID=DY256659; Name=DY256659; organism=Citrus clementina; type=EST; length=1305bp
TTCCATACGAAACTGCCCTGTTTTTGGAAATGCTAGCCTTGCCATGTTGG
GGAAGCTGTGCCCTCAGCTTCAGCATGTAGACTTGAGTGGGCTATATGGA
ATAACAGATGTTGGGATTTTCCCACTTTTGGAAAGTTGCAAAGCAGGACT
TGTGAAGGTGAATCTTAGTGGGTGCTTGAATCTGACAGATGAAGTAGTTT
TGGCCTTGGCTAGGCTACACAGTGAAACCCTCGAACTGTTGAACCTTGAT
GGTTGCAGGAAGATTACAGATGCGAGTTTGGTTGCAATTGGAAACAACTG
TATGTTCCTCAGTTATCTGGATGTCTCGAAGTGTGCAATCACTGATATGG
GCATTTCTGCCCTATCTCATGCAGAGCAGCTCAATTTACAAGTCCTTTCC
TTGTCAAGTTGCTCTGAAGTATCAAACAAGAGCATGCCTGCCTTGAAAAA
ATTAGGCAAGACTCTGTGGGATTAAATCTCCAAAACTGCAACTCAATTAA
TAGCAGCACAGTTGCTCGGCTTGTGGAAAGCCTGTGGAGATGCGATATTC
TCTCCTAATTGGGATGGAAATGGAATGTCCGTCCCCTAAATTAAAGTTGG
GTACAGTATAAGAATTCTTACGGTCAGTTTACATTGGTAGCAGCAATCAG
CATAGTGCTTTTCTTTTTCTGCCTCATCATAAGTGGTGGGCCTACACGTA
GTTGAGAAGCAGCTTTGTTGTTTTCCGGGGAACTTTGGCAGATTACTTCT
TCAACCTTTTTTTGGCTGGGCTTCCTTTCCATGGAAGCCTGTTGCGACTT
TTTAGCTTCCATTGGTGGGAGGCTGCCTAGTTCATGGCCATGGTTCCCTG
AGAATACATTTACCAAGTTGTTTTTGGTTTTCACTTTGGGGGTTCTCCAT
ATCTTATCATGATCAGTCATGGATCTGTTGGCTGGACATTCCGTGCACTG
TGTTTAAACTTTCATTTTAAGGTGTTTTTGGAACAAAAGGTTTCTCTATT
TTCATTCCGAATGAAGTCTGGTTAAAATCAGTCCCAGGCAAATTCAAAAA
GGCCCCTTTTTTAGGGAATTTTGGCACTAACCCCCAAATTCAAGGGGCCT
GGGGAAATTCGGGTTTTTTTTCTTAAGGGTTTTTTCGGTGTTTTTCGGGC
GTTTTTTTAGGCAATTTTTCAAAGGGGGGGGGGAAGTCCCCTCAAAAAAA
GGGGGGAGAAGCTTGTGGTTTTTTTAAAACAATTTTTCCATTTTTTTTGG
GTTCGGGGGTTTTTTCCCCACCCAAACACCCCTTTTTCTCTTTTTTTTGT
GGGGG
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