DY256667

Overview
NameDY256667
Unique NameDY256667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 2.005e-88
Identity = 154/177 (87.01%), Postives = 162/177 (91.53%), Query Frame = 2
Query:  353 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKRQKAMRRAEKERLKGSEATDEEL 883
            MAL NIGA N  DAFYRYKMP+M+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFGCELGAQSKFDEKTGTS VNG+H+TAKLAGLLE FIKKYVQCYGCGNPETEI+ITK QMIQLKCAACGFVSDVDMRDKL TFI+KNPPE KK SK +KAMRRAEKERLK  EA DEEL
Sbjct:    1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEEL 177          

HSP 2 Score: 35.4242 bits (80), Expect = 2.005e-88
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 3
Query:  927 DGTTKATFPKKKANGSEEDHSSPPPVKEEVEKDGRGKTE 1043
            DGT K+T  KKK +GS+ED  S  P  +++E+    K E
Sbjct:  194 DGTAKSTISKKKGSGSDEDRRS--PTHKQIEEKEEAKDE 230          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 1.080e-86
Identity = 156/176 (88.64%), Postives = 162/176 (92.05%), Query Frame = 2
Query:  353 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKRQKAMRRAEKERLKGSEATDEE 880
            MAL NIGA NR DAFYRYKMP+MITKIEGRGNGIKTN+VNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTG SLVNG+HDTAKLAGLLE FIKKYVQCYGCGNPETEI+I+KTQMI LKCAACGFVSDVDMRDKL TFILKNPPE KK  K +KAMRRAEKERLK  EA DEE
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGAHDTAKLAGLLEVFIKKYVQCYGCGNPETEILISKTQMISLKCAACGFVSDVDMRDKLTTFILKNPPEQKKGGKDKKAMRRAEKERLKEGEAADEE 176          

HSP 2 Score: 25.409 bits (54), Expect = 1.080e-86
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 3
Query:  927 DGTTKATFPKKKAN---GSEEDHSSPPPVKEEVEK 1022
            D T K    KKKA    GS+EDHSS P    + +K
Sbjct:  191 DSTAKGL--KKKATTATGSDEDHSSSPTRSHDGDK 223          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 5.776e-85
Identity = 150/177 (84.75%), Postives = 166/177 (93.79%), Query Frame = 2
Query:  353 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKRQKAMRRAEKERLKGSEATDEEL 883
            MAL NIGA NR DAFYRYKMP+M+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFGCELGAQSKFDEK GTSLVNG+HDT+KLAGLLENFIKKYVQCYGCGNPETEI+ITKTQM+QLKCAACGF+SDVDMRDKL +FILKNPPE KK+SK +K+MRRAEKERL+  EA DEE+
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILITKTQMLQLKCAACGFLSDVDMRDKLTSFILKNPPEQKKSSKDKKSMRRAEKERLREGEAADEEM 177          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.573e-82
Identity = 147/176 (83.52%), Postives = 160/176 (90.91%), Query Frame = 2
Query:  353 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKRQKAMRRAEKERLKGSEATDEE 880
            MAL NIGA NR DAFYRYKMPKM+TK EG+GNGIKTNI+N V+IAKALARP SYTTKYFGCELGAQSKFDEKTGTSLVNG+H+T+KLAGLLENFIKK+VQCYGCGNPETEIIITKTQM+ LKCAACGF+S+VDMRDKL  FILKNPPE KK SK +KAMR+AEKERLK  E  DEE
Sbjct:    1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIIITKTQMVNLKCAACGFISEVDMRDKLTNFILKNPPEQKKVSKDKKAMRKAEKERLKEGELADEE 176          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_RAT (Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.102e-43
Identity = 90/167 (53.89%), Postives = 114/167 (68.26%), Query Frame = 2
Query:  389 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESK---KASKRQKAMRRAEKERLKGSEATDE 877
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE+       K ++   R  K++  GS +T E
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDIGTGKKEKEKKNRKGKDKENGSVSTSE 177          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_MOUSE (Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.102e-43
Identity = 90/167 (53.89%), Postives = 114/167 (68.26%), Query Frame = 2
Query:  389 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESK---KASKRQKAMRRAEKERLKGSEATDE 877
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE+       K ++   R  K++  GS +T E
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDIGTGKKEKEKKNRKGKDKENGSVSTSE 177          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_PONAB (Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.455e-43
Identity = 90/167 (53.89%), Postives = 114/167 (68.26%), Query Frame = 2
Query:  389 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPE---SKKASKRQKAMRRAEKERLKGSEATDE 877
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE   S    K ++   R  K++  GS ++ E
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSE 177          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_HUMAN (Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 2.455e-43
Identity = 90/167 (53.89%), Postives = 114/167 (68.26%), Query Frame = 2
Query:  389 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPE---SKKASKRQKAMRRAEKERLKGSEATDE 877
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE   S    K ++   R  K++  GS ++ E
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSE 177          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_CAEEL (Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.759e-41
Identity = 80/136 (58.82%), Postives = 99/136 (72.79%), Query Frame = 2
Query:  389 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPE 796
            D FYRYKMPK+  K+EG+GNGIKT I NM +IAKAL RP  Y TKYFGCELGAQ+ FD K    +VNG HD  KL  +L+ FIKK+V C  C NPET++ + K   I+ KC ACG   D+D++ KL+TFI+KNPP+
Sbjct:   11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDGFIKKFVLCKSCENPETQLFVRKNN-IKSKCKACGCSFDIDLKHKLSTFIMKNPPK 145          
BLAST of DY256667 vs. ExPASy Swiss-Prot
Match: IF5_DROME (Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.298e-41
Identity = 87/177 (49.15%), Postives = 117/177 (66.10%), Query Frame = 2
Query:  353 MALLNIGADNRG--DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKASKRQKAM--RRAEKERLKGSEA 868
            MA +N+   NR   D FYRYKMP++  K+EG+GNGIKT +VNM ++A+A+ RPA+Y TKYFGCELGAQ+ FD K    +VNGSHD  KL  LL+ FI+K+V C  C NPET + ++ K Q I   C ACGF   + +  K+NTFI+KNPP    A++       +R+ K++ K   A
Sbjct:    1 MATVNV---NRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLCPECDNPETNLTVSAKNQTISQSCKACGFHGLLKVNHKVNTFIVKNPPSLNPAAQGSSLTEGKRSRKQKQKNDNA 174          
The following BLAST results are available for this feature:
BLAST of DY256667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
IF5_PHAVU2.005e-8887.01Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5_MAIZE1.080e-8688.64Eukaryotic translation initiation factor 5 OS=Zea ... [more]
IF5Y_ARATH5.776e-8584.75Probable eukaryotic translation initiation factor ... [more]
IF5Z_ARATH1.573e-8283.52Probable eukaryotic translation initiation factor ... [more]
IF5_RAT1.102e-4353.89Eukaryotic translation initiation factor 5 OS=Ratt... [more]
IF5_MOUSE1.102e-4353.89Eukaryotic translation initiation factor 5 OS=Mus ... [more]
IF5_PONAB2.455e-4353.89Eukaryotic translation initiation factor 5 OS=Pong... [more]
IF5_HUMAN2.455e-4353.89Eukaryotic translation initiation factor 5 OS=Homo... [more]
IF5_CAEEL1.759e-4158.82Eukaryotic translation initiation factor 5 OS=Caen... [more]
IF5_DROME2.298e-4149.15Eukaryotic translation initiation factor 5 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BF07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256667 ID=DY256667; Name=DY256667; organism=Citrus clementina; type=EST; length=1283bp
GAACCTCCCTTCTTCGCATTCTGTGTTGTGCCAACACTTGAATCGTATTT
TCAAGGTGAAGCACGTCAACATTGAAGTTTCTTTTATGTCCATACAGGCC
ATTTCCTGTTTGGGATCGGTTGGGTTGCTTGGAGAATATTGTCCTTCATC
CAGAAAAAAGATTAGACCTCTGTCTGAAAGATTTGGCTGTATGCATCTCG
TGCCATTTCAGGAATACCCAGAAGAGTTTTGTGGTTGCAGTCACTGGCAA
CCTTTCCTAACCGCTGAACATTGTTGTTCTCTTGTGCAAGAAGTTTTAGA
AGACAGCACTATTTCCTACGCTTGACATTTGTTCTGTTTCTTTGAGGTCA
AGATGGCTTTGCTGAACATTGGTGCTGATAACCGGGGTGATGCCTTCTAC
CGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGCCGTGGGAATGG
CATCAAGACAAATATTGTGAACATGGTTGATATTGCAAAGGCTTTAGCAA
GGCCAGCTTCTTACACAACAAAATATTTCGGTTGTGAGCTTGGTGCACAA
TCTAAATTTGACGAGAAAACTGGTACTTCTCTTGTTAATGGATCTCATGA
TACTGCTAAGCTTGCAGGTCTTCTTGAGAACTTCATCAAGAAATATGTTC
AGTGTTATGGTTGTGGAAACCCAGAAACTGAGATAATAATCACTAAAACT
CAGATGATCCAACTGAAGTGTGCTGCTTGTGGTTTTGTGTCTGATGTTGA
TATGCGAGACAAGCTAAACACTTTCATTCTGAAGAACCCACCCGAGTCAA
AAAAGGCCTCCAAAAGGCAGAAGGCAATGAGGAGGGCTGAGAAGGAGAGA
CTTAAGGGAAGTGAGGCAACGGATGAGGAATTGAAAAAAAAAAAAAAAAG
GTCAAAAGAAGGCTTCCTCTTCAAAGGATGGCACTACAAAAGCCACTTTC
CCGAAGAAAAAGGCAAATGGTTCTGAAGAGGACCACTCCTCCCCACCACC
CGTTAAGGAAGAAGTTGAAAAAGATGGTCGAGGGAAAACTGAACCCCCCC
TAAAGGGCACCTCGTCCGCCCCTCCAAAAAAAAAATTAAAGGCTGGCAAC
GGGCGGAAATAGGTTTAGCCTTCTCTCCGGGGAAAAGTCCCAAAAAAAAA
GGGGCTAAAAACCAACCCCAAAAAAAAAGGAATATTATTTAATATCCCCA
AAAAAAGGGTTTTCCCCCGGGTGGTTGGAAAAAAAAGGGGGGAAAACCAC
CACCCCACAAAATCCCCCCCCCCACAAAAAAAA
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