DY256668

Overview
NameDY256668
Unique NameDY256668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6125 contig Ccv1_Contig6125:740..1509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256668 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 65/208 (31.25%), Postives = 98/208 (47.12%), Query Frame = 3
Query:    3 FSYCLPSFKALSFSGSLRLGPI------GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAG-TIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGRFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 590
            FSYC+    + S   +L LG +      G P     T L+++ +  + YY+ L  + VG   + I P A   N   G G  IIDSGT  T  V  AY +VR  F  ++   +   S   FD C+  P     +  PT  + F G ++ LP +N  I S +  + CLAM ++       +++  N+QQQN  ++YD  NS +  A   C
Sbjct:  237 FSYCMTPIGS-STPSNLLLGSLANSVTAGSPN----TTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFI-SPSNGLICLAMGSSSQG----MSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of DY256668 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 64/203 (31.53%), Postives = 94/203 (46.31%), Query Frame = 3
Query:    3 FSYCLPSFKALSFSGSLRLGPI--GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGRFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 590
            FSYC+ S+ + S S +L LG    G P+    T L+ +    + YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F  ++       S     TC+  P     +  P I++ F G  + L + N+LI S A  + CLAM ++       +++  N+QQQ  ++LYD+ N  +      C
Sbjct:  238 FSYCMTSYGSSSPS-TLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILI-SPAEGVICLAMGSSS---QLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of DY256668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR4.928e-1831.25Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.446e-1731.53Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1BF08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256668 ID=DY256668; Name=DY256668; organism=Citrus clementina; type=EST; length=770bp
CTTTTTCTTACTGTTTGCCCAGCTTCAAGGCACTTAGCTTTTCTGGGTCA
TTAAGATTAGGACCCATTGGTCAGCCCAAGCGGATTAAGTATACACCATT
GCTTAAAAACCCAAGAAGATCATCACTTTACTATGTTAATTTGTTGGCCA
TTAGGGTTGGCAGAAGAGTTGTTGATATCCCACCTGGTGCCTTACAGTTC
AATCCCACAACCGGCGCTGGCACTATTATTGATTCTGGCACAGTTTTTAC
CAGACTGGTGGCGCCAGCTTACACCGCAGTGAGAGACGTGTTCCGTAGAC
GTGTAGGGAGTAACTTAACAGTGACATCCCTAGGCAGATTCGACACGTGC
TACTCGGTCCCAATCGTTGCGCCGACAATCACGTTGATGTTCTCAGGCAT
GAACGTGACTCTACCACAAGACAACCTTCTAATCCACAGCACTGCAGGGA
GCATCACATGCTTGGCCATGGCTGCAGCTCCAGACAACGTCAACTCAGTG
CTTAATGTCATTGCCAATATGCAGCAACAAAACCACAGAATCCTCTATGA
TGTGCCCAATTCAAGGCTCGGTGTCGCCCGTGAGCTTTGCACTTAGATAT
AGAATTGTGAGATATGTTTGTACTTGTTTTCTCTTTTTCTTGTGGGTCCT
GTAATGGGTAATTTTAGCCGCGTGAGGTTTGTTTGTCATTATTGCTAATT
AACTTTTTATGGGAGGAATTGTGGGGACTCTAATGAGACCCAAATAAAAT
TATTTTGTACCTTTTTGTCA
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