DY256674

Overview
NameDY256674
Unique NameDY256674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1094
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1029 contig Ccv1_Contig1029:2..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256674 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 8.803e-84
Identity = 168/312 (53.85%), Postives = 201/312 (64.42%), Query Frame = 3
Query:   42 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDTLDDNPQGPKNWAISKLLCTNGKKPGDPMRRCVAGIAAAFLKANLMVIVKDFRKMLKRP 968
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMD LDDNP   K+WA+SK  C NG +  DPMRRCV+GI  AFLK       +DFR++LK P
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDP 303          
BLAST of DY256674 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 7.453e-83
Identity = 166/312 (53.21%), Postives = 200/312 (64.10%), Query Frame = 3
Query:   42 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDTLDDNPQGPKNWAISKLLCTNGKKPGDPMRRCVAGIAAAFLKANLMVIVKDFRKMLKRP 968
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMD LDDNP   K+WA+SK  C NG +  DPMRRCV+GI  AFLK       +DFR++LK P
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDP 303          
BLAST of DY256674 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 8.297e-58
Identity = 125/266 (46.99%), Postives = 164/266 (61.65%), Query Frame = 3
Query:  180 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDTLDDNPQGPKNWAISKLLCTNGKKPGDPMRRCVAGIAAAFLKANLMVIVKDFRKMLKRP 968
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD LDD+  G   + ++  +C NG++    MR  V GI  AFLK +L     + R ++K P
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDP 303          
BLAST of DY256674 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.120e-45
Identity = 108/257 (42.02%), Postives = 146/257 (56.81%), Query Frame = 3
Query:  180 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDTLDDNPQGPKNWAISKLLCTNGKKPGDPMRRCVAGIAAAFLKANL 926
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D LDD+ +G +  + S  LC NG++   PMRR V G+  +FLKA L
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFREC-QGPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYL 289          
BLAST of DY256674 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.383e-42
Identity = 108/280 (38.57%), Postives = 151/280 (53.93%), Query Frame = 3
Query:  105 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDTLDDNPQGPKNWAISKLLCTNGKKPGDPMRRCVAGIAAAFLKA 920
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP                 CAP + +H+QF+  C   + +HF    YGHMD L++    P    +S L+C    +P   MRR + GI  AFL A
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNH---TISCAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNA 306          
The following BLAST results are available for this feature:
BLAST of DY256674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN8.803e-8453.85Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI7.453e-8353.21Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH8.297e-5846.99Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH2.120e-4542.02Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL6.383e-4238.57Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1BH01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256674 ID=DY256674; Name=DY256674; organism=Citrus clementina; type=EST; length=1094bp
GCGGGGTGCACAAACTCAACACACAAACAATTTAGACTACAATGACAGCA
GTAGCCGATAGCAAGCCCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAAC
GGCCTTACTATCAGTTTTTTCAAGTGGACCTTATTCCCCGAAACTCAAGA
CAGTGAATAAACCATGGTTTAATAGTTTTCCTCCAAAGCCGTTGAATATT
GTTTATCCAGAAGAAAAAGGAACATATGAAGTTATTTTGTTTTTCCACGG
CACTGCTCTCAGCAACACAAGCTATTCCAATCTCTTAGACCACTTGGCTT
CCCATGGATACATCGTTGTTGCCCCTCAGTTATACGATTTTCTGCCGCCG
AAAGGAAACGGAGAAGTTAACGATGCAGCAAACGTCCTCAACTGGTTATC
AACAGGCCTTCAATCAGAACTCCCGGAAAATGTTGAAGCTAACCTAAACT
ACGTTGCTCTTATGGGACACAGTCGCGGAGGACTAATAGCGTTCGGTCTG
GCACTTGGCTATGCAACAAATCCTCCAGTTAGCATTAAAATTTCAGCATT
AGTAGGCATAGACCCAGTTGCGGGGTTAGCCAGCGTTCATAGTGAACTTG
AACCCCCGATTCTCAGTCATGACTCATTCGAGTTCTCAATTCCTGTTACT
GTAATTGGCACCGGACTCGGTGGTGTGACAAAGTGCATGCAGCCTTGTGC
ACCGGAAAACAAAAACCATGAGCAATTTTTCAAGAGGTGTACATATTCAG
ATCATGCTCATTTTGATGCTAAGGATTATGGTCACATGGACACTTTAGAT
GATAATCCCCAGGGACCCAAGAATTGGGCAATTTCAAAACTTTTGTGCAC
GAATGGAAAAAAACCAGGGGATCCCATGAGGAGATGTGTTGCTGGCATTG
CTGCGGCTTTTTTGAAAGCTAATTTGATGGTGATTGTGAAGGATTTCAGG
AAAATGTTGAAAAGACCCTTCCTCTGGCTCCGAAAGACCCTGGATGAAGG
TTGAATTCATTCCCCGCACCTCGGGGCAAAACCTTAACCCCCTGCCCCCC
CCCCCATTTTGAACTCAAATGCCCCTTTTCCTTTTTTGGGGAGG
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