DY256689

Overview
NameDY256689
Unique NameDY256689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig684 contig Ccv1_Contig684:421..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256689 vs. ExPASy Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.108e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 2 
Query:   50 NVTKANLSNANLEGALATGITSFRGSNITGADFTDVPLRDDQRGYLCKVADGVNPTTGNATRDTLLCN 253
            NVTK NL+NANLEGA  TG TSF+GSNITGADFTDVPLRDDQR YLCKVADGVN TTGNATRDTLLCN
Sbjct:  157 NVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224
The following BLAST results are available for this feature:
BLAST of DY256689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL15A_ARATH3.108e-2888.24Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1CC05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256689 ID=DY256689; Name=DY256689; organism=Citrus clementina; type=EST; length=518bp
GGCTGATCTTTCAGATGCTGATCTCAGAAGTGCAGACTTCTCATTGGCAA
ATGTGACAAAGGCAAACTTGAGTAATGCTAACTTGGAAGGTGCTCTTGCT
ACTGGCATCACCTCTTTCAGGGGATCGAATATAACCGGAGCTGACTTCAC
CGACGTGCCTTTGAGAGATGATCAACGGGGATATCTGTGCAAAGTTGCAG
ATGGGGTAAATCCGACAACCGGAAATGCAACCCGGGACACATTGCTCTGC
AACTAGAATTTGATTTCCTTGGTACTTCCCCATCTGGCAAAGAGGAGAGC
AACGTCCTTACTTTTGCTACATCAACAGCATCAATTTTCATTTGAGTTGA
GTGACACAGTTCTTGTGCTGCATCTAATGTAAAACATGAATTTACCCATA
AATAGTGGCATTGAGTCATTACTCAATTTCTACACAATTTAAAGAAGCTT
ATTTGTAATTTGCATGATGTAGTAAGCGGTAAACATGTATAACATAAGAA
AAATAATTCTCAATTTCC
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