DY256697

Overview
NameDY256697
Unique NameDY256697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.115e-29
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   73 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYA 291
            MP+ CEI CEI++A+LLPP+GVC R GCC+VEF ICL+LTILGYVPGIIYA+Y IVF  R+EYFDEYRRP+Y+
Sbjct:    1 MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEYFDEYRRPIYS 73          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.608e-29
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   73 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLY 288
            M + CE+ CEI +A+LLPPVGVCLRHGCC+VEF ICL+LT LGY+PGIIYA+YAI F+ RDEYFDEYRRP+Y
Sbjct:    1 MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   82 RCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEY 273
            RC  F EILLA++LPP+GV LR GCCS+EFCICLLLTILGYVPGIIYA+Y +V +D D+Y  EY
Sbjct:    5 RCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQYQREY 68          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.120e-21
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   73 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRD 255
            M +  E+FCEIL+A+LLPP+GVCL+ GCC+VEF ICL+LTILGY+PGIIYALY IVF +R+
Sbjct:    1 MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNRE 61          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.377e-12
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   94 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 240
            F E++LA++LPPVGV LR+G  +VEF ICLLLT+LGY+PGIIYA+Y +V
Sbjct:    6 FIEVILAIILPPVGVFLRYGL-AVEFWICLLLTLLGYIPGIIYAVYVLV 53          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   94 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 237
            F +I++A+LLPP+GV LR GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct:    6 FVDIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   94 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 237
            F EI+LA++LPP+GV L+ GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct:    6 FVEIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1
Query:  100 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 240
            E++LA++LPPVGV LR+    VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct:    8 EVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1
Query:  100 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 240
            E++LA++LPPVGV LR+    VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct:    8 EVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53          
BLAST of DY256697 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  100 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 237
            +IL+A++LPP+GV L+ GC   EF ICLLLT LGY+PGIIYA+YAI
Sbjct:    9 DILIAIILPPLGVFLKFGC-GHEFWICLLLTFLGYIPGIIYAIYAI 53          
The following BLAST results are available for this feature:
BLAST of DY256697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RC24_ARATH2.115e-2973.97UPF0057 membrane protein At4g30660 OS=Arabidopsis ... [more]
RC22_ARATH3.608e-2975.00UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
OSR8_ORYSJ1.623e-2171.88Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
RC23_ARATH2.120e-2170.49UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
LT02_HORVU1.377e-1267.35Low temperature-induced protein lt101.2 OS=Hordeum... [more]
RCI2A_ARATH5.234e-1264.58Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
RCI2B_ARATH1.523e-1164.58Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
LT01_HORVU3.393e-1168.09Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL3.393e-1168.09Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
LTI6B_ORYSJ4.431e-1167.39Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1CD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256697 ID=DY256697; Name=DY256697; organism=Citrus clementina; type=EST; length=405bp
GAAGGCAATTTCGAGGCATTACCGAGTAAATCTGTACCTGTGTTTCTTCA
GCTTCAACCCTTTTTAACGAACATGCCTACTCGCTGCGAAATCTTCTGCG
AAATTCTGCTCGCGGTTTTGCTCCCTCCTGTGGGAGTTTGCCTCAGGCAC
GGCTGCTGCAGTGTGGAGTTTTGCATCTGTTTGCTACTCACTATTCTAGG
ATACGTGCCTGGAATAATCTATGCACTATATGCCATTGTATTTGTGGATC
GTGACGAGTACTTTGATGAATACAGACGTCCCCTGTATGCTCCAGGACCA
TGATATCTCTTTATGTTCTCTTGATTTTCTCAATAACGCTATACTGTCAT
GATGTTGAACTCTTTCCTTTATAAAATTGTTATCTAAGTTGTTTGACTTC
TGAGT
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