DY256729

Overview
NameDY256729
Unique NameDY256729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9566 contig Ccv1_Contig9566:4..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: RN157_MOUSE (RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            D +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  269 DVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: MGRN1_RAT (Probable E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            + +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  271 ENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328          
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: MGRN1_MOUSE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            + +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  270 ENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: MGRN1_HUMAN (Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            + +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  270 ENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: MGRN1_DANRE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.226e-16
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            + +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  268 ENSDNSSECVVCLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLPFRALLQIR 325          
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: RN157_HUMAN (RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 8.132e-16
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 AGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            A DE +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  266 AEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of DY256729 vs. ExPASy Swiss-Prot
Match: RN157_XENLA (RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.090e-15
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 AGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 180
            A DE +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q + CPICR P   LL+I+
Sbjct:  266 AEDELSDNSAECVVCLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLPFRALLQIR 326          
The following BLAST results are available for this feature:
BLAST of DY256729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RN157_MOUSE3.650e-1655.17RING finger protein 157 OS=Mus musculus GN=Rnf157 ... [more]
MGRN1_RAT4.767e-1653.45Probable E3 ubiquitin-protein ligase MGRN1 OS=Ratt... [more]
MGRN1_MOUSE4.767e-1653.45Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus ... [more]
MGRN1_HUMAN4.767e-1653.45Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo... [more]
MGRN1_DANRE6.226e-1653.45Probable E3 ubiquitin-protein ligase MGRN1 OS=Dani... [more]
RN157_HUMAN8.132e-1655.74RING finger protein 157 OS=Homo sapiens GN=RNF157 ... [more]
RN157_XENLA3.090e-1554.10RING finger protein 157 OS=Xenopus laevis GN=rnf15... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1DD02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256729 ID=DY256729; Name=DY256729; organism=Citrus clementina; type=EST; length=468bp
GCTGGTGATGAGACTGATTCTGGAAAAGAATGTGTCATCTGCTTGTCGGA
ACCACGGGACACAACGGTTCTCCCATGCCGACACATGTGCATGTGCAGTG
AATGTGCGAAGGTTTTGCAGTTCCAGACAAACCGGTGTCCAATTTGCAGG
CAACCGGTTGAGAGGCTGCTGGAAATTAAGGTGAATAATGCAGCTGATGA
TTGAGGACGGTCTCTGCTCCCAAATGATTGGCTTTTGTACTCGAAAAAAG
AAGGGAAGAAAAAATTGTTGGGCCAATGACTTCTCATGTATATATGGTTT
CGTGCTGTTCTATGAGTTACATATAGAAATTCTTTTGATTTTTTTTTTTG
GGTTTGGTACCTTGGTTCAAAGCATTATCTAATTACTGTTGTGTAAGCCT
GTCGAGGAATCCTTAATATATGTATTAAACGAAAGACATCATTGCTAGTT
AACAACAACATATATTCT
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