DY256731

Overview
NameDY256731
Unique NameDY256731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14534 contig Ccv1_Contig14534:324..1625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256731 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.428e-32
Identity = 106/259 (40.93%), Postives = 140/259 (54.05%), Query Frame = 2
Query:   14 GALLPRNGIGENSRGTGYNSVSQTSSVLNFPLNHSAELPGNSFPLGSTPGISAGMSTLTTKGGFQEEINS-DIKG-----SGGF-MPSYDIFNDLQQHKPHN---------WELQNVGFAFDASQHSNSLQASVDVTPSVLVNQGYSSSP--RNVQNSNVSAMGKPIFSVGEGSEHGNALNVGQ----HLNSLLVDN-STRVKSERVTDT-SCQP--TLLPQHFGQEDLMSAILKQQDGLGPAENDFEFDGYSLDNIPV 712
            GAL  RN I E    T    +  T SV N   N  A+LP +SFPL S PGIS  +S       +QEE+NS D KG     + GF  PSYDIFND  QH+ HN         W+L+N+G  F ++Q +    A+   T +   ++ YSSS   R  + ++ + +G          EHG  L        HLN + +D  S RVKSERV +T +C P  TL  + + QEDLMSA LKQ+ G+   +N+FEFDGYS+DNI V
Sbjct:  433 GALAVRNSIPE----TNSRVLPTTHSVFN---NFPADLPRSSFPLASAPGISVPVSV-----SYQEEVNSSDAKGGSSAATAGFGNPSYDIFNDFPQHQQHNKNISNKLNDWDLRNMGLVFSSNQDA----ATATATAAFSTSEAYSSSSTQRKRRETDATVVG----------EHGQNLQSPSRNLYHLNHVFMDGGSVRVKSERVAETVTCPPANTLFHEQYNQEDLMSAFLKQE-GIPSVDNEFEFDGYSIDNIQV 664          
BLAST of DY256731 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 5.067e-28
Identity = 92/238 (38.66%), Postives = 126/238 (52.94%), Query Frame = 2
Query:   29 RNGIGENSR--GTGYNSVSQTSSVLNFPLNH-SAELPGNSFPLGSTPGISAGMSTLTTKGGFQEEINSDIKGSGGFMPSYDIFNDLQQHKPHNWELQNVGFAFDASQHSNSLQASVDVTPSVLVNQGYSSSPRNVQNSNVSAMGKPIFSVGEGSEHGN-----ALNVGQHLNSLLVDN--STRVKSERVTDTSCQPTLLPQHFGQEDLMSAILKQQDGLGPAENDFEFDGYSLDNIPV 712
            RN I E+SR   T Y +++   S  + P N+   ELP NSFPL S PGIS  +   T+   +QEE+NS    +G   PSYD+F   Q    ++W+L+N+G AFD+ Q S S   S         ++ YSSS  +  N+ V+A           +EHG         + QH       N  S RVKSERV   +       Q+  QEDLMSA+LKQ+ G+ P + +F+FD YS+DNIPV
Sbjct:  482 RNNIPESSRVLPTSYTNLTTQHSSSSMPYNNFQPELPVNSFPLASAPGISVPVRKATS---YQEEVNSS--EAGFTTPSYDMFTTRQ----NDWDLRNIGIAFDSHQDSESAAFSA--------SEAYSSSSMSRHNTTVAA-----------TEHGRNHQQPPSGMVQHHQVYADGNGGSVRVKSERVATDTATMAFHEQYSNQEDLMSALLKQE-GIAPVDGEFDFDAYSIDNIPV 690          
The following BLAST results are available for this feature:
BLAST of DY256731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARR2_ARATH4.428e-3240.93Two-component response regulator ARR2 OS=Arabidops... [more]
ARR1_ARATH5.067e-2838.66Two-component response regulator ARR1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1DD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256731 ID=DY256731; Name=DY256731; organism=Citrus clementina; type=EST; length=1302bp
AAATGGGGCTGCTGGTGCATTGTTACCAAGAAATGGGATTGGTGAAAATA
GTAGAGGGACAGGGTACAATTCAGTTTCTCAAACATCTTCAGTGTTAAAT
TTCCCCTTAAACCACTCGGCAGAATTGCCAGGCAATAGTTTCCCCCTAGG
AAGTACACCGGGAATATCCGCAGGGATGTCCACTCTCACAACTAAAGGTG
GATTTCAGGAAGAAATCAACTCAGACATTAAAGGATCTGGAGGATTTATG
CCAAGTTATGATATTTTTAATGATTTGCAACAGCACAAACCCCACAACTG
GGAGCTGCAGAATGTGGGCTTCGCCTTTGATGCTTCTCAGCATTCAAACT
CTCTGCAAGCCAGTGTTGATGTAACACCTTCAGTTTTAGTTAATCAAGGA
TATTCTTCTAGCCCAAGGAATGTACAGAATAGTAATGTATCAGCGATGGG
CAAGCCAATTTTCTCGGTTGGGGAAGGGAGCGAGCATGGGAATGCTCTGA
ATGTTGGTCAGCATCTCAATAGCCTTCTTGTTGATAACTCAACAAGAGTG
AAATCTGAGAGAGTTACAGATACAAGCTGTCAGCCTACACTCCTCCCTCA
ACACTTTGGTCAGGAAGATCTTATGAGTGCAATTCTGAAACAGCAGGATG
GCCTTGGACCAGCTGAAAATGACTTTGAATTTGATGGGTATTCCCTGGAC
AATATTCCCGTGTAGTTCATGGCTGCAACTTCTGAAGTACATACCACAGA
AATAGTCGATGGTAGAGAGGATTGCATGATTTCATGTAGCTGCATCTTCC
TTTTTGACTATCATGTTTTGCTGGTTTTATTTGCACATAAGAAGATCAGG
CTAATGATATTGATTGGTATGGGATCAATTGCGTCAGAGGATATTTGTGA
AGCTGGTAAATAGCAATGCATGATATGCAAAGGCGTACATGCCAAATTTT
TGACTGTTTTCAGTTAGCAACTCCAGCAACAACCAACTAATTTTTAGGAC
CCTTGTCAGGGGGGCCATTGGTTTTGAGGGCATGGGTTAAAGTCCGGGAG
GGAAAATTGTTTGGAAAAATTCTGCAAAAATTTAAAGGAACCCCTTCAAA
ATTCAAAAAAACCCTTTCAAAAATTTGGGTTGGTTTTTTCCTCTCTTTTT
TTTTTTTTTGAAAAAAAATTTCCAACCACATTCCCCTATAATTTTTTCCC
CTGGGGGCCAGGGGTTTTTCTTTTTTCTCCCCCCCCCGGGGGTGAAAGGG
AGGAAAGAAAAAATTTGTGTGGGTGGTGCAAACATATAATTTTCTTCTCT
TT
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