DY256749

Overview
NameDY256749
Unique NameDY256749
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256749_ssr326 microsatellite DY256749_ssr326:326..339. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig992 contig Ccv1_Contig992:1..346. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256749 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 3 
Query:    6 GISTEEARDRIQGLLNYSWKKLNENRIAKSNCLPNTLMKMCLNMARTAQCIYQHGDGIGSSNGVTKDRLVSLILKPIPIEQ 248
            G S E AR+ I+ L++ +WKK+N++R A S    +  +++ LN+AR AQC+YQHGDG G  N  TKDR++SL+++PIP+ +
Sbjct:  517 GASEEGAREYIKYLISATWKKMNKDRAASSP-FSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIPLNK 596
[Close]
BLAST of DY256749 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 3 
Query:    6 GISTEEARDRIQGLLNYSWKKLNENRIAKSNCLPNTLMKMCLNMARTAQCIYQHGDGIGSSNGVTKDRLVSLILKPIPI 242
            G S +EAR+ I+ L++ SWK++N      ++   N  +++C N+ R +Q IYQ+GDG  S N ++K+R++ LI+ PIP+
Sbjct:  544 GASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGDGHASQNNLSKERVLGLIITPIPM 622
The following BLAST results are available for this feature:
BLAST of DY256749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MYRS_QUEIL2.224e-1546.91Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS1_CANSA5.127e-1239.24(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1DG08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256749 ID=DY256749; Name=DY256749; organism=Citrus clementina; type=EST; length=346bp
GCGGGGGCATATCCACGGAAGAAGCAAGAGACCGCATACAAGGTTTATTA
AACTATTCGTGGAAGAAGCTGAATGAGAATAGAATCGCTAAAAGTAATTG
CCTCCCAAATACATTGATGAAAATGTGCTTAAACATGGCAAGAACTGCAC
AATGCATTTATCAGCATGGAGATGGCATTGGATCATCAAATGGGGTCACT
AAAGATCGTTTAGTCTCTTTGATCCTTAAGCCTATCCCTATCGAACAATA
ATTAAGAATCCTTATTATCGTGTATGTTTTTACTTGGCATTATTTCCAAA
TAAAGCGCTTGTCATGTAGTTCGATTATATATATATATAATTAGCA
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