DY256754

Overview
NameDY256754
Unique NameDY256754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig976 contig Ccv1_Contig976:118..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256754 vs. ExPASy Swiss-Prot
Match: CHMU_ARATH (Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 4.660e-77
Identity = 142/255 (55.69%), Postives = 183/255 (71.76%), Query Frame = 2
Query:   83 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLG--------NDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD 823
            LTL+ +R+SLIRQED+IIF L+ERAK+  NA  YD +     GF+GSL++Y+V+ +E + A  GR+++P+E PFFPD LP   +PP +YP+VLH A  SIN NK IW+MYF  L+P  V +GDDGNY STA  D  CLQ LS+RIHYGKFVAE KF+ +P  YE AI+A+D+DALM++LT+  VE  +KKRVE K    GQEV +G         +G++   +K+ P +V  LYGDWIMP TK VQVEYLLRRLD
Sbjct:   80 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 334          
BLAST of DY256754 vs. ExPASy Swiss-Prot
Match: CHMU_YEAST (Chorismate mutase OS=Saccharomyces cerevisiae GN=ARO7 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.601e-45
Identity = 98/251 (39.04%), Postives = 149/251 (59.36%), Query Frame = 2
Query:   83 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD 823
            L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E   +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL    +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M  +T   VE+ + +R+ KKA V G + +     ++    ++ P  + ++Y + ++P TK V+VEYLLRRL+
Sbjct:   10 LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPT-----NESGERRITPEYLVKIYKEIVIPITKEVEVEYLLRRLE 255          
BLAST of DY256754 vs. ExPASy Swiss-Prot
Match: CHMU_SCHPO (Probable chorismate mutase OS=Schizosaccharomyces pombe GN=SPAC16E8.04c PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.416e-41
Identity = 99/250 (39.60%), Postives = 145/250 (58.00%), Query Frame = 2
Query:   83 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYD---QSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRL 820
            L L+ +R +LIRQEDTIIF  +ERA+ P N   Y    +   +   + GS L Y++ + E + A   RY +PEE PF  D LP   +P F     LHP   ++N N  I + Y N+++P   + GDD  NY ST   D+ CLQ+LSRRIHYGKFVAE K+   P +Y+  I A+D   + N +     E+ V KR+  KA+  G++ +   D  K +  +++   V+ +Y D+++P TK V+V+YLL RL
Sbjct:    8 LKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYYINEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGIENEIVDAAQEERVLKRLHYKALNYGRDAA---DPTKPSD-RINADCVASIYKDYVIPMTKKVEVDYLLARL 250          
The following BLAST results are available for this feature:
BLAST of DY256754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CHMU_ARATH4.660e-7755.69Chorismate mutase, chloroplastic OS=Arabidopsis th... [more]
CHMU_YEAST3.601e-4539.04Chorismate mutase OS=Saccharomyces cerevisiae GN=A... [more]
CHMU_SCHPO1.416e-4139.60Probable chorismate mutase OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1DH09ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256754 ID=DY256754; Name=DY256754; organism=Citrus clementina; type=EST; length=909bp
GGAGGAAGAATATCTCTTCTTAATTAAGAAAAGATTTGTTGTAGTCCTTG
TAGTAGAGAACAAGATGGCATTGGCAGGGGATTTAACGCTTGACTTGGTG
AGGGACTCATTGATTAGGCAAGAAGATACCATTATATTCTGTCTCATTGA
GAGAGCTAAGCACCCTCTTAATGCTCCAGCTTATGATCAATCTTATGCTT
CATTTCCTGGCTTCTCTGGTTCTTTGCTTCAATACATTGTTCAACAATCA
GAGGCCATGCAAGCCACAGCTGGGAGATATGAGAATCCAGAAGAAAGTCC
CTTCTTCCCTGATAAACTGCCGCATTCATTTGTACCGCCTTTCAAATATC
CGCAGGTTTTGCATCCTGCAGGGACTTCGATCAACAAAAATAAGATCATA
TGGGATATGTACTTCAACCAATTGCTTCCGCTTTTTGTTGCTGAGGGTGA
TGATGGCAACTATGCATCAACTGCCACTAGCGATCTTGCCTGTCTACAGG
CTCTCTCTAGAAGGATACATTATGGGAAATTCGTAGCCGAGGTTAAATTC
AGGGATGCCCCACATGAATATGAACTTGCAATTCGTGCTAAGGACAGAGA
TGCTCTGATGAATCTATTAACATATGAGAATGTAGAACAGATGGTGAAGA
AGAGAGTTGAGAAGAAGGCGATGGTACTCGGGCAAGAAGTGAGCCTCGGC
AATGACGGCGACAAGCAAGCGAGGTTCAAAGTGGATCCATCTGTAGTTTC
AAGACTCTATGGAGATTGGATCATGCCCTTTACCAAGCTCGTTCAAGTTG
AGTACCTCCTTCGCCGCTTGGATTGAAGTTGAAACCTGTGCTAGCTATTG
TCTTAGACCCGTCACATTTTCTCCATGATCTAGTAATAAACAATATTTCA
TTTTAAATC
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