DY256759

Overview
NameDY256759
Unique NameDY256759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15349 contig Ccv1_Contig15349:465..1154. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.436e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.436e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.426e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.426e-39
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.426e-39
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  278 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  297 NIVLSGGSTMFLGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DY256759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
ACT3_ORYSJ2.436e-3998.75Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI2.436e-3998.75Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT7_ARATH5.426e-3998.75Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT13_SOLTU5.426e-3997.50Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU5.426e-3997.50Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT3_PEA1.209e-3897.50Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT3_SOYBN1.579e-3898.75Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT_GOSHI2.693e-3896.25Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT_COLSC2.693e-3896.25Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT1_ORYSJ2.693e-3896.25Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AB02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256759 ID=DY256759; Name=DY256759; organism=Citrus clementina; type=EST; length=690bp
GTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCCGGTATTGCCGAC
CGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAA
GGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAA
TCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAG
TATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCT
TTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGT
GTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTG
GGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAAGCTTC
TTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCC
TTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTT
TTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATG
CTTTTCTATTTCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCTCC
CCCTCTCAAAAGGAACATTAATGTTAATAGCTATTGTATGAGAAAACTTT
AATTAGTGTCAGCTTGCAGTCATAAATTTGGTTATTAAAA
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