DY256768

Overview
NameDY256768
Unique NameDY256768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1353
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig993 contig Ccv1_Contig993:1..1353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: TXN4B_HUMAN (Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.165e-45
Identity = 91/151 (60.26%), Postives = 112/151 (74.17%), Query Frame = 1
Query:   85 MSYLLTTLTKKEEXXXXXXXXXXKVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCPLPPERIPKYQLLYKDV 537
            MS+LL  LT K+E          KVLVLRFGR  D +CLQLDDIL+K+S D+SK A + LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK+VG+F  KQDFID++E IYRGAM+GKLIV  P+ P+ IPKY LLY+D+
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: TXN4B_MOUSE (Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.515e-43
Identity = 88/151 (58.28%), Postives = 109/151 (72.19%), Query Frame = 1
Query:   85 MSYLLTTLTKKEEXXXXXXXXXXKVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCPLPPERIPKYQLLYKDV 537
            MS+LL  LT K+E          K LVLRFGR  D +CLQLDDIL+K+S D+SK A + L D+D     VY +YFDI+ IPSTVFFFN  HMK D G+ DHTK+VG+F  KQDFID++E IYRGAM+GKLIV  P+ P+ +PKY LLY+D+
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKGLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYLGDVDH--TPVYTQYFDISYIPSTVFFFNGQHMKGDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNVPKYDLLYQDI 149          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.582e-14
Identity = 44/135 (32.59%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   85 MSYLLTTLTKKEEXXXXXXXXXXKVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCP 489
            MSY+L  L    +          +V+V+RFG   D  C+++D++L   +  V  FA + LVDI   +V  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E +YRGA KG+ +V  P
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT--EVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSP 133          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.582e-14
Identity = 44/135 (32.59%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   85 MSYLLTTLTKKEEXXXXXXXXXXKVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCP 489
            MSY+L  L    +          +V+V+RFG   D  C+++D++L   +  V  FA + LVDI   +V  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E +YRGA KG+ +V  P
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT--EVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSP 133          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: TXN4A_DICDI (Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum GN=txnl4a PE=3 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 7.511e-14
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  154 KVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDI-DSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCPLPPERIPKYQLLYK 531
            +V+V+RFG   +  C++ DDILA  +  V   A + +VDI +  D+    + +D      T+FF+   H+ +D GT ++ K   A   KQD ID++E +Y+GA KGK +VN   P +  P+Y+ L K
Sbjct:   15 RVVVIRFGHDYNPECMKQDDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDC---PTMFFYRNKHIMVDLGTGNNNKINWALTNKQDMIDIIETVYKGARKGKGLVNS--PRDFSPQYKFLKK 136          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe GN=dim1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.728e-13
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   85 MSYLLTTLTKKEEXXXXXXXXXXKVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCP 489
            MSY L  L               +++V+RFGR  D  C++ D++L + +  V   A + LVDID  +V  + K +++    + +FF+   HM +D GT ++ K       KQ+ ID++E I+RGA KGK +V  P
Sbjct:    1 MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDID--EVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVISP 133          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: DIB1_YEAST (Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae GN=DIB1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.156e-12
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  154 KVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCP 489
            +++V+RFGR  D  C+ +D++L+  +  V  FA + L DID  +V  + + +++T   + +FF++  HM  D GT ++ K       KQ+ ID++E I+RGA K K +V  P
Sbjct:   25 RLVVIRFGRKNDRQCMIMDELLSSIAERVRNFAVIYLCDID--EVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNNKLNFIVDDKQEMIDILETIFRGARKNKGLVVSP 134          
BLAST of DY256768 vs. ExPASy Swiss-Prot
Match: DIB1_CANGA (Spliceosomal protein DIB1 OS=Candida glabrata GN=DIB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.951e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  154 KVLVLRFGRAMDALCLQLDDILAKSSRDVSKFADVALVDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHRKQDFIDVVEAIYRGAMKGKLIVNCP 489
            +++V+RFGR  D  C+ +D++LA  +  V  F  + L DID  +V  +   +++      +FF+   HM  D GT ++ K       KQ+ ID++E I+RGA K K IV  P
Sbjct:   23 RLVVVRFGRTADRECMLMDEMLASVAEKVRNFVAIYLCDID--EVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNNKMNFLPDDKQELIDIMETIFRGARKNKGIVVSP 132          
The following BLAST results are available for this feature:
BLAST of DY256768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TXN4B_HUMAN2.165e-4560.26Thioredoxin-like protein 4B OS=Homo sapiens GN=TXN... [more]
TXN4B_MOUSE4.515e-4358.28Thioredoxin-like protein 4B OS=Mus musculus GN=Txn... [more]
TXN4A_MOUSE2.582e-1432.59Thioredoxin-like protein 4A OS=Mus musculus GN=Txn... [more]
TXN4A_HUMAN2.582e-1432.59Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
TXN4A_DICDI7.511e-1436.22Thioredoxin-like protein 4A homolog OS=Dictyosteli... [more]
DIMI_SCHPO3.728e-1333.33Mitosis protein dim1 OS=Schizosaccharomyces pombe ... [more]
DIB1_YEAST3.156e-1234.82Spliceosomal protein DIB1 OS=Saccharomyces cerevis... [more]
DIB1_CANGA5.951e-1134.82Spliceosomal protein DIB1 OS=Candida glabrata GN=D... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2AC11ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256768 ID=DY256768; Name=DY256768; organism=Citrus clementina; type=EST; length=1353bp
GCTCGACGAGAAGAGCCCTTAAAGGCGAATCGAAGACAATCAATCTCGCT
GTTCCCGGCCTTTTTCCGATCAGGGGGAAGGAAGATGAGTTACCTGCTAA
CAACCCTAACGAAGAAGGAAGAAATAGATACAATTATTAGAGACACGATC
GATAAGGTTCTCGTCCTCCGCTTCGGTCGCGCCATGGACGCCCTCTGTCT
CCAGCTTGACGACATCCTTGCAAAATCATCACGTGATGTTTCAAAGTTTG
CCGATGTGGCACTCGTGGACATTGACTCCGAGGATGTTCAGGTTTACGTC
AAGTACTTCGATATTACTTTGATTCCATCAACTGTTTTCTTCTTCAATGC
TCATCATATGAAGATGGATTCTGGGACTGCTGATCACACTAAATGGGTGG
GTGCATTCCATAGAAAACAAGACTTCATCGATGTTGTAGAGGCAATATAT
AGGGGAGCCATGAAAGGCAAGCTTATCGTGAATTGCCCCCTGCCTCCAGA
GCGAATACCAAAATATCAGCTGTTGTACAAGGATGTGTAGAATGGGGGAA
GGCTTGGGGACTCCATACACTTCCTATGTTCATTTTTAACACTAGAAATA
TCAGCATTAGAAAATTTATTTATCACAAATACTGTAGTTTGCTCAGGTGG
AAACAAGATTATTGCATTATCNNNNCCCANATTACAAAAAAAAAAACAAA
AAAACAACTACCCAAAACAACAATTAACAACAAAATAAAAAAAAAAAAAA
ATGGGGAAAAAAAAAAAAAAATAAAAAAAAGTTGGTGGGCCCTCCCCCCC
CCCAAAAAAATATAAAAAAAAAAAATTTTAAAGTGGGGCCCCAACTATAG
TCCTTCTGGGGAATTTCCCCAAAGGGGGGGGTAAAAAATTTTCCCGGCCG
CCTTTTTTAACACCCCGCGGGGGGGAAAACCCCGGGGTTCTCCAAAAAAA
TTCCCCTCGGAACCACCCCCCCCCTTTCCCCCGGGGGGGAAAAAAAAAAA
AAGCCCCCCCCCCACCCCCCCCCCCCCAGTTGGGCCCCCCCCGGGGGGGG
GGAAAAGAAAATGGGCCCCTTTTATTTTTTTTAAAAATTCCCGCTTTATT
TTTTTTTTAAAACCCCCTCTTTTTTTTACACACAACGGCCAAAAACCGCA
AAACACCTTCTTTTAAATAAAAAAAAAAAAAAAAAACGAAGAGGGGGGGG
TGGTAGTGTTTTGTCTTTTTTTTGGGAAAAAAAAAACCCCCCTCTTTTTA
ATAAAAAAGAGGGGCCCTCCTCCCCCCCGCCGCCGGGGGGGGGGGAAAAA
AAAACCCCCCTCTCTTTGCGGGGGGGGGGGGGGGGGGGCGCCCCCTCGCC
CCC
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