DY256770

Overview
NameDY256770
Unique NameDY256770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1238
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256770_ssr630 microsatellite DY256770_ssr630:630..641. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_XENTR (Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.611e-36
Identity = 96/247 (38.87%), Postives = 133/247 (53.85%), Query Frame = 3
Query:  189 PKQVIGPDENG-VKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            P++VI    NG +K + EYK ND+G K+KI    R  K+   + SK    R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   45 PQEVI----NGKIKTITEYKLNDEGKKIKIV---RTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITSKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 277          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_HUMAN (Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 4.716e-36
Identity = 94/246 (38.21%), Postives = 129/246 (52.44%), Query Frame = 3
Query:  186 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            PPK+VI      +K V EYK ++DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   55 PPKEVIN---GNIKTVTEYKIDEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_MOUSE (Eukaryotic translation initiation factor 3 subunit G OS=Mus musculus GN=Eif3g PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 6.159e-36
Identity = 94/246 (38.21%), Postives = 128/246 (52.03%), Query Frame = 3
Query:  186 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            PPK+VI      +K V EYK  +DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   55 PPKEVIN---GNIKTVTEYKIEEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EI3GA_XENLA (Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus laevis GN=eif3g-A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.159e-36
Identity = 94/246 (38.21%), Postives = 130/246 (52.85%), Query Frame = 3
Query:  189 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            P++VI      +K + EYK NDD   VKI    R  K+   + SK   +R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   43 PREVIN---GNIKTITEYKLNDDDKTVKIV---RTFKIETVKASKVVAQRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 275          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_RAT (Eukaryotic translation initiation factor 3 subunit G OS=Rattus norvegicus GN=Eif3g PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.044e-36
Identity = 94/246 (38.21%), Postives = 128/246 (52.03%), Query Frame = 3
Query:  186 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            PPK+VI      +K V EYK  +DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   55 PPKEVIN---GNIKTVTEYKVEEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_DANRE (Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio GN=eif3g PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.051e-35
Identity = 93/244 (38.11%), Postives = 131/244 (53.69%), Query Frame = 3
Query:  189 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL-TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGK-GGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DKPXXXXXXXXXXXXTK-GTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            PK+ +   +  +K V EYK +DDG K KI    R  K+   + SK    R+NW KFG++  +  G  + T   ++++ +       S  E+  A       + K  G  ++ CR C  KGDHWT+RCP+KD   P +  +         +K              K G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   29 PKETV---KGNIKTVTEYKIDDDGQKFKII---RTFKIETRKASKAVARRKNWKKFGNSEYDAPGPNVATTTVSDDVFMTFI----SSKEDLNAQDQDEDPMNKLKGQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKAAEPEPAQPVQNKTGKYVPPSLRDGGTRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISF 260          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_BOVIN (Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus GN=EIF3G PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.051e-35
Identity = 93/246 (37.80%), Postives = 129/246 (52.44%), Query Frame = 3
Query:  186 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            PPK+VI      +K V EY+ ++DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   55 PPKEVIN---GNIKTVTEYRIDEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EI3GB_XENLA (Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus laevis GN=eif3g-B PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.340e-35
Identity = 93/246 (37.80%), Postives = 129/246 (52.44%), Query Frame = 3
Query:  189 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            P++VI      +K + EYK ND   K+KI    R  K+   + SK    R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRETDL ELFRPFG++SR+Y+A D+ TG S+GF F++F
Sbjct:   43 PREVIN---GNIKTITEYKLNDKDKKIKIV---RTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTADKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 275          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 2.961e-30
Identity = 78/228 (34.21%), Postives = 126/228 (55.26%), Query Frame = 3
Query:  216 NGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFCEQ 884
            +G K +IE++ +D+G KVK+    R + +   R+     ER+ W KFG    ++ G  +R T V     L  +     +K EE   A  + A++   G+ ++ CR C  KG+H+T++CP+K +  P +                   KG Y+ P +RAG+ R   D    R R+D  ++RVTNLS+DTRE +L +LFR FG + RVY+A D++TG ++GF FV++ ++
Sbjct:   29 DGTKTMIEFRIDDNGKKVKVTRVIR-KTVITERVQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAKGSSVVRCRAC--KGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDR 253          
BLAST of DY256770 vs. ExPASy Swiss-Prot
Match: EIF3G_NEMVE (Eukaryotic translation initiation factor 3 subunit G OS=Nematostella vectensis GN=v1g171563 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.961e-30
Identity = 86/241 (35.68%), Postives = 124/241 (51.45%), Query Frame = 3
Query:  186 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXXX--------TKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRETDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNF 875
            PP   +   EN  K V EYK +D+G   KI    RV      R++K   +R+ W KFGD+  +  G   T  +  + +     +    P+ T+   D L +L   G  ++ CR C  KGDHWT++CP+KD        + +                     T G YV PG+R GA R G  M    +R++  ++RVTNLSE+TRE+DL ELFRP G +SR+++A D+ T  S+GF F+NF
Sbjct:   31 PPSSEVREGEN--KIVTEYKRDDEGKLQKIITTYRVE---TRRVAKEIAKRKLWKKFGDSKNDKPGPNKTTTNVCDDVFLILTSNKENPDATEE--DPLKKLS--GQKIVQCRIC--KGDHWTTKCPYKDQLEVIHQQLKEDDGSGQPGTPPSEPANPAAASTSGKYVAPGLRDGANRRGETMPSRSQRDETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 260          
The following BLAST results are available for this feature:
BLAST of DY256770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
EIF3G_XENTR3.611e-3638.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_HUMAN4.716e-3638.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MOUSE6.159e-3638.21Eukaryotic translation initiation factor 3 subunit... [more]
EI3GA_XENLA6.159e-3638.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_RAT8.044e-3638.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_DANRE1.051e-3538.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOVIN1.051e-3537.80Eukaryotic translation initiation factor 3 subunit... [more]
EI3GB_XENLA2.340e-3537.80Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCHPO2.961e-3034.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEMVE2.961e-3035.68Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2AD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256770 ID=DY256770; Name=DY256770; organism=Citrus clementina; type=EST; length=1238bp
GTTTCACAAAAAATCGAAATCTCAAACCCTAAAACGCTTTGTCTCGCAAC
CTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCGAAAAAGATGTC
GGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTGGAGCGAACTGG
ACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGCCTAAACAAGTG
ATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAATACAAGTTTAA
CGATGACGGCAATAAGGTCAAAATAACCACCACCACGCGCGTGCGCAAGC
TCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGAGAAACTGGGCC
AAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGACTTACCATGGT
CTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCCTGGTAGCAAAC
CAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAACTTGGGAAAGGT
GGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAGGGTGATCACTG
GACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGCTGAGACATTCA
TTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTGCTGGCGCGACC
AAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCGGAGAGAACTGG
AACTGATATGAGACGCAGGAATGATGAGAACTCTGTTAGGGTCACCAACC
TATCGGAGGACACTCGGGAAACTGACTTGCTTGAGCTCTTCCGGCCTTTT
GGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAGAAGACTGGCATAAG
CAGAGGTTTTGGTTTTGTGAACTTTTGTGAACAAGGGAAGATGCTTCAAA
AGCTATCAACAAACTGAATGGGCTATGGGTAAGAACAATCTCCTTCCTCA
AAAGTTAAATGGGCCACCTCCCAGGACTAACTTAAATCGATTCAATTTTT
CCTTTGGACCTTTAACGGGGAAAACAAAAACAATTTTTGGGGTATTTATT
TTTAAACTAACCTTTAAGAATTGGAAAGGAACTTTGGGAGGGGTTTTGGT
TTAAAAAAAACTAAGGGGTTTTTCCCTACAAAAGAAACTTTTGGTACCTC
CAAAAATATTTTTAAATTTTTTGGCCCCGATGAAGGTTTCAAAAGGGGTT
TTTTTTCTAAGTGTTTTTTTTTTGTTTTTTTTTCTATA
back to top