DY256772

Overview
NameDY256772
Unique NameDY256772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1318
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256772_ssr217 microsatellite DY256772_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
DY256772_ssr230 microsatellite DY256772_ssr230:230..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10103 contig Ccv1_Contig10103:155..1472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256772 vs. ExPASy Swiss-Prot
Match: CV013_MOUSE (Uncharacterized protein C22orf13 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.362e-20
Identity = 65/187 (34.76%), Postives = 104/187 (55.61%), Query Frame = 1 
Query:  385 VPHINQLFSWDCGLACVLMVMRTIG-INNCNIQG-LAEQCCTTSVWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYIVICGYDADSDDFEIKNPA 912
            VP I QL+ WDCGLAC  MV+R +G +++   +  L E   T S+WT+DLAYL++ F V   + T TLG +  Y  ++FY++   T+  RV+ LF +A++  +++E  ++S  +I + +  G ++AI LV+   L H  +    V     + SG         Y GH+IV+ GY+  +      NPA
Sbjct:   22 VPIIQQLYHWDCGLACSRMVLRYLGQLDDGEFENALQELQLTRSIWTIDLAYLMRHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVQVEKCTVSVQDIQVHLAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIVLRGYNRATGCIFYNNPA 206
[Close]
BLAST of DY256772 vs. ExPASy Swiss-Prot
Match: CV013_HUMAN (Uncharacterized protein C22orf13 OS=Homo sapiens GN=C22orf13 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.153e-19
Identity = 64/187 (34.22%), Postives = 101/187 (54.01%), Query Frame = 1 
Query:  385 VPHINQLFSWDCGLACVLMVMRTIG-INNCNIQ-GLAEQCCTTSVWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYIVICGYDADSDDFEIKNPA 912
            VP I QL+ WDCGLAC  MV+R +G +++   +  L +   T S+WT+DLAYL+  F V   + T TLG +  Y  ++FY++   T+  RV+ LF +A++  + +E  ++S  +I   +  G ++AI LV+   L H  +    V     + SG         Y GH+IV+ GY+  +      NPA
Sbjct:   22 VPVIQQLYHWDCGLACSRMVLRYLGQLDDSEFERALQKLQLTRSIWTIDLAYLMHHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVLVEKCTVSVKDIQAHLAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHHCFCRTPDYQGHFIVLRGYNRATGCIFYNNPA 206
The following BLAST results are available for this feature:
BLAST of DY256772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CV013_MOUSE1.362e-2034.76Uncharacterized protein C22orf13 homolog OS=Mus mu... [more]
CV013_HUMAN1.153e-1934.22Uncharacterized protein C22orf13 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2AD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256772 ID=DY256772; Name=DY256772; organism=Citrus clementina; type=EST; length=1318bp
GATAAAAGAAAAGGCTTATTTTCTTTGTCGTACAAGGAGGCAAAGCAATT
TTTCTTCCCACTCCGCACAACAGGAAAGGCAGGAAGACTTGCTGGCAAAG
CTGACAAGTGCATTACTACTACTTGCACTTATTTGGTGTCTAGGTTATAG
GCTTTACTGAGCATTTGGTCATTGATGTGGCCTATCTATTTTCTGTTAAA
CAAGATTCTTAGAACGGAAGAAGAAGAAAAAGAAGAAGAAGAAGATCAAG
TAGCTAATGTGAACGGTGCAAACATGGTAGAATGCTGCCCATCCGATCAG
TCACCAAGCGGTCGGAAATGCGGTGATTCAATCTTGCCCTCTGCACACTT
TGTTGAAATCAGTTAGCTGGGCTGGTGTTTGTAGGTCCCACACATAAATC
AGCTATTTTCTTGGGATTGTGGTCTGGCATGTGTGTTGATGGTAATGAGA
ACAATTGGAATCAACAATTGCAATATTCAAGGTTTGGCGGAACAATGCTG
CACGACTAGCGTTTGGACCGTTGATCTGGCGTATTTACTGCAGAAATTTA
ATGTTGGTTTTTCCTACTTCACAATAACATTAGGAGCAAACCCAAATTAC
TCTGTTGAGACGTTTTACAAGGAGCAATTGCCTACTGATTTGGTACGAGT
GGATATGCTATTCCAGAAGGCAAGAAGTGCTGGAATTAAAATAGAGTGCG
GATCAATCAGTGGAGTAGAAATCTCTCTCATGATATTGTCAGGGAATTAT
ATTGCAATTGCATTAGTTGATCAGTACAAATTAAGTCACTCATGGATGGA
GGATGTCATTGTCCCAGGCTTTTATGGCAGTGACTCTGGCTATACTGGTC
ACTATATTGTGATATGTGGCTATGATGCCGACTCAGATGATTTTGAAATC
AAAAATCCTGCCAGTTTGTAGGAAACATGAGAAAGTCCCATCCAAGTGGC
CAAAAAAAGCCCGGAAATCTTTTTGTACTGACGAAAATCTTCCTTCGAAT
TCTCCTGGAAAAAACCAAGAAATAAATCCCATTTCCTTTGTATAATTTCT
TACCCTTGAATTTTGACCCCCCTACCTTTAATATTGCATTATGCCTTTTG
CAAAAATGAACAAAACAAAAAAAAAAATAATTGTCTTTCAACCTTTAACC
CCGGTTTTAATGGGGGCCTTCTTTCCTTCTCAAAAATTCCTAACACCCGT
TGTCCTTTGTGAAAAATTTTTTCCCCCCTTTATTTTTTTTAAAATGGGTT
ATATTTTTTATAAACACAAAAAATTATTTTTTCTTTATTAAAAAAAAAAT
CATCATTAATAATACAAA
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