DY256776

Overview
NameDY256776
Unique NameDY256776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10498 contig Ccv1_Contig10498:661..1417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.422e-38
Identity = 92/169 (54.44%), Postives = 110/169 (65.09%), Query Frame = 2
Query:    2 NSSGTDGVVPVQTRNVNANVHLVNDACFDLDFPGSK---SYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITNPYGKGV--GVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEV--EPADRSSSIYGFGIVPS 487
            NSSGTDGVVPV+ R V   +  VN+ CF++DF G     +YG GYN               EVGVVPDG S + D++ PYG     G + G Q  V +++A+REARV+RYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD     +         GFG+VP+
Sbjct:  200 NSSGTDGVVPVENRTVR--IPTVNENCFEMDFTGGSKGFTYGGGYNCISHSVSSSSM----EVGVVPDGGS-VADVSYPYGGPATSGADPGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIFSGFGLVPT 361          
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 79/162 (48.77%), Postives = 91/162 (56.17%), Query Frame = 2
Query:    2 NSSGTDGVVPVQTRNVNANVHLVNDACFDLDFPGSKSYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIYGFGIVPS 487
            NSSG DGVVPVQ      N   +N+  F+ D   SK    G+N               +V +VP+      ++TN               VQ+S A+REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD             GFG+VPS
Sbjct:  152 NSSGNDGVVPVQ------NKLFLNEDYFNFDLSASKISQQGFNFINQTVSTRTI----DVPLVPESGGVTAEMTNT----------ETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSRENDGGDVGVYGGFGVVPS 293          
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 77/167 (46.11%), Postives = 96/167 (57.49%), Query Frame = 2
Query:    2 NSSGTDGVVPVQTRNVNANVHLVNDACFDLDFPGSKSYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITNPYGKGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLE-----VEPADRSSSIYGFGIVPS 487
            N++G D +VPVQT+     +   ND CFD+DF  SK   + Y                E GVVPDG++      N   +     +      Q S+ DREARVLRYREKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRT+ E     +     S++   +G+VP+
Sbjct:  196 NNAGGDSLVPVQTKTEPLPL-TNNDHCFDIDFCRSKLSAFTY--PSQSVSHSVSTSSIEYGVVPDGNT-----NNSVNRSTITSSTTGGDHQASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPT 354          
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 70/170 (41.18%), Postives = 94/170 (55.29%), Query Frame = 2
Query:    5 SSGTDGVVPVQTRNVNANVHLVNDACFDLDFPGSKSYGYGYNXXXXXXXXXXXXXXX-EVGVVPDGSSAMTDITNPYGKGVGVEA----GNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSS----SIYGFGIVPS 487
            S G DGVVP+Q     +++   +   F L      S G  YN                ++ VVP+ +++   + +P      ++       Q V Q++  +REARVLRYREK+K RKF+KTIRYASRKAYAE+RPRIKGRFAKR + E E  +  S    S  G+GIVPS
Sbjct:  178 SFGGDGVVPLQVEESTSHLQQ-SQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVPS 346          
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 2
Query:  176 EVGVVPDGSSAMTDITNPYGKGVGVEAGNQ------TVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIY---GFGIVPS 487
            E GVVP+ ++ +T  ++P      VE          TV Q+S  DREARVLRYREKRK RKFEKTIRYASRKAYAE+RPR+ GRFAKR ++E E    ++ +    G+GIVPS
Sbjct:  261 ETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EIEAEEQGFNTMLMYNTGYGIVPS 372          
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  176 EVGVVPDGSSAMTDITNPYG-KGVGVEAGNQTVVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDLEVEPADRSSSIY----GFGIVPS 487
            ++GVVP+ +++   ++NP   K V  +        +S  DREARVLRYREK+K RKFEKTIRYASRKAYAE RPRIKGRFAK+ D++ E     S++     G+GIVPS
Sbjct:  246 DLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGIVPS 354          
BLAST of DY256776 vs. ExPASy Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  281 SAADREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDL 430
            S  +REARVLRY+EKR+ R F K IRY  RK  AE RPRIKGRF KRT L
Sbjct:  341 SDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTSL 390          
The following BLAST results are available for this feature:
BLAST of DY256776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
COL4_ARATH1.422e-3854.44Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL3_ARATH2.687e-2948.77Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL5_ARATH7.318e-2746.11Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL2_ARATH2.436e-2241.18Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH4.156e-2253.98Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL1_ARATH4.156e-2253.21Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL7_ARATH4.310e-1168.00Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2AE05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256776 ID=DY256776; Name=DY256776; organism=Citrus clementina; type=EST; length=754bp
AAACAGTTCGGGCACCGATGGTGTTGTTCCCGTACAAACCAGAAACGTTA
ACGCTAACGTCCATTTGGTCAACGATGCATGCTTTGACCTCGATTTTCCA
GGCTCCAAATCTTACGGTTATGGCTACAACTCTCACTCGCAGTGCCTCAG
TCAGAGTGTGTCGTCGTCATCGTTGGAGGTGGGAGTGGTGCCAGATGGAA
GTAGTGCGATGACGGACATAACGAATCCGTACGGCAAAGGAGTGGGGGTG
GAGGCAGGGAATCAGACGGTGGTGCAGATTTCGGCAGCGGATAGGGAGGC
GAGGGTGTTGAGGTACAGAGAGAAGAGGAAGAATCGAAAGTTCGAGAAGA
CGATACGGTACGCTTCGAGGAAAGCGTATGCGGAGATGAGGCCGAGGATC
AAAGGGAGGTTCGCGAAGCGTACGGATCTCGAAGTGGAACCGGCCGATCG
TAGTAGTAGCATTTACGGATTCGGCATCGTTCCGTCGTTTTAATTTTTTT
TTTTTTTTTTTTGGTTGGTCTCCGTCTTCAATAAAGTGTTTCCTGCTCTC
CGTTTTGTAAATATAAACAGGTGATAATGAGACGTGTTTGATCGACGCGA
TCTGGACCGTCGATTTGTAGAAGTTTTCATGTACTAATTTTTTTTTTTTG
TGGCTTTGTAATGAACCTGTGATGATGATCATGATGATGTTTTTGGGCTG
TAAAGCTCATGGATCATCTTTTTGACCCTCTTTTTAATCTGAACATTTGA
ATCC
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