DY256778

Overview
NameDY256778
Unique NameDY256778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1135
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig994 contig Ccv1_Contig994:1..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY256778 vs. ExPASy Swiss-Prot
Match: GACS_PSESY (Sensor protein gacS OS=Pseudomonas syringae pv. syringae GN=gacS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.215e-12
Identity = 52/160 (32.50%), Postives = 73/160 (45.62%), Query Frame = 2 
Query:  266 VLLVEDQAVLQRIGIRMLKKLGASVTLVKDGEAAVEAMTLMINADRKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRKLEAEAEKGQSIPIIAFTALVTADNEREWFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKLSCDEQAEA 745
            VL V+D      +   +L+ +GA V  V+ G AAV A+                             +DL+LMD QM  MDG +AT  IR  EAE  +  S+PI+A TA   A+ +R    SGMD +L KP  E  LA  +++         + + Q EA
Sbjct:  659 VLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAV-------------------------QQEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS-SLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVVLKWTGLALRNPAPERQNEA 792
The following BLAST results are available for this feature:
BLAST of DY256778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GACS_PSESY7.215e-1232.50Sensor protein gacS OS=Pseudomonas syringae pv. sy... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2AE07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256778 ID=DY256778; Name=DY256778; organism=Citrus clementina; type=EST; length=1135bp
GCGGGGACAGCAACCAGAGCTACAAGTACACAACGAGCTTTGGTCTCTTT
TGCATACAAAATACAATATGTCTATTGGCAAAGAGCAAGCTGAAACAACA
TCCCATCCTGAAAAGCTTGAGCTTGAGCATGGGCTTCAGCTTGAGTTTGA
GCCTGTCCCCGTCACCAATAATATCATTCCACAAGCTGAAGGCTCTTCCT
CTTCTTGTCTCGTGAATGATGATGTTACGGGCCTTGATGAGAAGAAAGTT
TTGGAAGGCCTAAGCGTTTTGCTTGTTGAAGATCAAGCAGTACTACAAAG
GATAGGAATCAGAATGCTAAAAAAGCTTGGAGCTAGTGTTACTCTAGTCA
AAGATGGAGAGGCTGCCGTTGAAGCCATGACCCTCATGATCAATGCAGAT
AGGAAAAATCATCAAATTCAAAACCTCCACCATGGATCCAATTTGGAAAC
TCATAATTCCCCTCACTATGACTTAATCCTCATGGACTGCCAAATGGGCA
GCATGGATGGCTGTAAAGCAACAAGAGTAATCAGGAAGCTAGAAGCTGAA
GCTGAAAAGGGTCAAAGCATTCCCATAATTGCATTTACAGCTCTGGTAAC
CGCAGATAATGAACGAGAATGGTTCAATTCTGGCATGGATACTTTTCTCA
ACAAGCCAGCGCAGGAACACCTGTTGGCTGCCGCCATTGTTGAGACTATT
GCTCGTAAAAGTCACAAGTTATCATGTGATGAGCAAGCAGAAGCTCAAGA
TGAAAGGTAAACAAGTTGTCTTAGGGCATCTTCTGGGGTAACAATGTTGC
AGATCAAAGTCATGTGCTTAGTTCTCAACTAGTGCATGCGTATGTTTTTG
GGGTCAAGGACTTTGTGATGATGCTATGTTTAGTTGGTTATTAGTAAGTT
GTAATTTGTGCTTTCCAACCCAAATCCCCACTTTCTTTTATGGCTGCATT
ATTAAAAAAGTGGACGTTATTTGCGGTTTGTGTGTGCTTTTTAACTAAAT
ATCTTTCTTAGGTACCGTTGGTTATATATATTAAATGAGTTGTTGTAAAA
AGGTTTTGGGGGACTGTAATTGGTGATTTGGGAAAATTGGGGTAAATCCG
TTTGGCTTACAAAAAAAAAAGTTCGGGGTTTTGTT
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