DY256782

Overview
NameDY256782
Unique NameDY256782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9581 contig Ccv1_Contig9581:5..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.428e-48
Identity = 101/123 (82.11%), Postives = 105/123 (85.37%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 440
            MARIKVHELRQK+K +               RVAKVTGGAPNKLSKIKVVRLS+AQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.425e-48
Identity = 100/123 (81.30%), Postives = 105/123 (85.37%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 440
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR S+AQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.254e-48
Identity = 100/123 (81.30%), Postives = 104/123 (84.55%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 440
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR S+AQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.593e-47
Identity = 99/123 (80.49%), Postives = 104/123 (84.55%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 440
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR S+AQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.745e-46
Identity = 98/123 (79.67%), Postives = 103/123 (83.74%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 440
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR S+AQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.214e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 437
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.214e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 437
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 437
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 437
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122          
BLAST of DY256782 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   72 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSVAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 437
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
The following BLAST results are available for this feature:
BLAST of DY256782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES1.428e-4882.1160S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH5.425e-4881.3060S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH9.254e-4881.3060S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH4.593e-4780.4960S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH1.745e-4679.6760S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT1.214e-3156.5660S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE1.214e-3156.5660S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN3.533e-3155.7460S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK3.533e-3156.5660S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN3.533e-3155.7460S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AE12ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256782 ID=DY256782; Name=DY256782; organism=Citrus clementina; type=EST; length=632bp
GAGGGTTTTCATAACCATATTCATAAGCAGAGGAAGCCGCCGTTGCAGGA
GCAGAGACACCAAACGTAGCAATGGCTAGGATCAAGGTGCATGAGCTGAG
GCAGAAATCGAAGGTGGATCTTTTGAACCAGTTGAAGGAACTCAAGGCTG
AGCTCGCCCTCCTTCGCGTTGCTAAGGTCACCGGCGGTGCCCCTAACAAG
CTATCCAAGATCAAGGTGGTGAGGTTGTCGGTCGCACAAGTGTTGACTGT
CATTTCACAAAAGCAGAAGGCTGCATTGAGGGAGGCATACAAGAATAAGA
AGTTCTTGCCCCTTGATCTGCGTCCCAAGAAGACCCGGGCTATCAGGAGA
AGGCTTACCAAGCACCAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAG
GGAGATGTACTTTCCCATGAGGAAGTACGCTATTAAGGTGTAGGCTAGAA
TCTTTTTCTAGGAGTATCTTGGTATCTTGCAGTGACGAACCTATTTTGTT
GACAAATTTTTACTTTGTTACCTTTTCAAATATCATTTTTGTTCAATCTT
ATGTGTGTAAAACTTGAAGGGTGCATCTCAACCTAAACAAGATGTGCTAG
ATTGTGATGGAATAGCAGTCAAGATAGGATTT
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