DY256790

Overview
NameDY256790
Unique NameDY256790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9642 contig Ccv1_Contig9642:4..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y464_SYNE7 (UPF0133 protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   A+  GAE LS LV  A KDA+QKS  AMKE+M  L   LG+P
Sbjct:   10 LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPEALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y1054_SYNP6 (UPF0133 protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   A+  GAE LS LV  A KDA+QKS  AMKE+M  L   LG+P
Sbjct:   10 LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPEALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y5067_ANASP (UPF0133 protein alr5067 OS=Anabaena sp. (strain PCC 7120) GN=alr5067 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 52/103 (50.49%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+  GA+ LS LVT A KDA+ KS   M+ERM DL   L +P
Sbjct:   12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPDALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y2322_ANAVT (UPF0133 protein Ava_2322 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_2322 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.399e-16
Identity = 52/103 (50.49%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+  GA+ LS LVT A KDA+ KS   M+ERM DL   L +P
Sbjct:   12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEILGEAGGGLVKVIVSGNQEPKRVEISPDALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y2554_CYAP8 (UPF0133 protein PCC8801_2554 OS=Cyanothece sp. (strain PCC 8801) GN=PCC8801_2554 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.315e-16
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG ++ L E   KAQ V Q  A ++Q+EL   E +G+ EG+L+KV +SGNQ+P    I   A+E GA++LS LVT+A KDA+ +S   M+ +M +L   L +P
Sbjct:   11 LGKIKELQEAFAKAQQV-QAGAQQLQQELEQMEIEGFSEGKLVKVIMSGNQEPRSVTILPEALEKGADELSQLVTDAMKDAYTQSTETMRTKMEELTSGLNLP 112          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y448_NOSP7 (UPF0133 protein Npun_F0448 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F0448 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L +  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+  GAE LS LVT A K+A+ KS   M+ERM +L   L +P
Sbjct:   12 LGKMKELADAFKKAQQV-QEGAKRLQEELEQMEILGESGGGLVKVIVSGNQEPKRVEISPDALAEGAEVLSDLVTVAMKEAYNKSTATMRERMEELTSGLELP 113          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y899_CYAP4 (UPF0133 protein Cyan7425_0899 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0899 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L   ++KAQ V Q  A ++Q++L   E +G   G L+KV +SGNQ+P R EI+   M  GAE ++ LVT A KDA+ KS   M+ERM +L   L +P
Sbjct:   11 LGKMKELAAAIQKAQQV-QEGAKKLQEDLEKMEIEGVAAGGLVKVIMSGNQEPRRVEISPDLMSEGAEVVADLVTAAMKDAYLKSTTTMRERMEELTGGLSLP 112          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y723_THEEB (UPF0133 protein tlr0723 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0723 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG M+ L   ++KAQ V Q  A ++Q++L   + +G   G  +KV +SG Q+P R EI+   +  GAE LS LVT A +DA+QKS   M+ERM +L  SL +P
Sbjct:   11 LGKMKELAAAIQKAQQV-QEGAKKLQEDLERMDIEGQAAGGAVKVIMSGTQEPRRVEISPDLLSEGAEVLSDLVTAAMRDAYQKSTATMRERMEELTGSLNVP 112          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y2224_CYAP7 (UPF0133 protein PCC7424_2224 OS=Cyanothece sp. (strain PCC 7424) GN=PCC7424_2224 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 579
            LG ++ L E  +KAQ V Q  A ++Q EL     +G+     + V +SGNQ+P    I   A+E GAE+LS LVTEA KDA+ KS   M+++M +L   L +P
Sbjct:   11 LGKIKELQEAFQKAQQV-QEGAKQLQDELEQMSIEGHSSDGSVTVVMSGNQEPRSVTIQPTALEKGAEELSTLVTEAMKDAYSKSTDTMRQKMEELTSGLNLP 112          
BLAST of DY256790 vs. ExPASy Swiss-Prot
Match: Y020_PROM4 (UPF0133 protein P9211_00201 OS=Prochlorococcus marinus (strain MIT 9211) GN=P9211_00201 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.183e-13
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  271 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP-QGLSEG 597
            L N   L E  KKAQ + Q +A ++Q+EL A E +G  +   + + LSGNQ P+R EI  + +  G EK  + + EA KDAH+ S   MKERM +L   L +   G+ +G
Sbjct:    6 LPNFGQLTEAFKKAQQIQQ-DAQKLQEELDAMELEGKNQDGRVSICLSGNQLPLRIEIDPSILLEGKEKAEIAILEALKDAHELSTSTMKERMQELTGGLNLNLPGIDDG 114          
The following BLAST results are available for this feature:
BLAST of DY256790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y464_SYNE74.348e-1850.49UPF0133 protein Synpcc7942_0464 OS=Synechococcus e... [more]
Y1054_SYNP64.348e-1850.49UPF0133 protein syc1054_d OS=Synechococcus sp. (st... [more]
Y5067_ANASP4.807e-1750.49UPF0133 protein alr5067 OS=Anabaena sp. (strain PC... [more]
Y2322_ANAVT1.399e-1650.49UPF0133 protein Ava_2322 OS=Anabaena variabilis (s... [more]
Y2554_CYAP85.315e-1643.69UPF0133 protein PCC8801_2554 OS=Cyanothece sp. (st... [more]
Y448_NOSP71.184e-1548.54UPF0133 protein Npun_F0448 OS=Nostoc punctiforme (... [more]
Y899_CYAP43.445e-1544.66UPF0133 protein Cyan7425_0899 OS=Cyanothece sp. (s... [more]
Y723_THEEB1.002e-1443.69UPF0133 protein tlr0723 OS=Thermosynechococcus elo... [more]
Y2224_CYAP78.485e-1441.75UPF0133 protein PCC7424_2224 OS=Cyanothece sp. (st... [more]
Y020_PROM47.183e-1340.00UPF0133 protein P9211_00201 OS=Prochlorococcus mar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AG09ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256790 ID=DY256790; Name=DY256790; organism=Citrus clementina; type=EST; length=844bp
GGATCTAAAGCTTGCTTCGTGTTCTCAATGGCTTCGACAAGTGCCTTTAC
AGCTCAGATTTCAAGTATTCACTGGAAGAAGCCCATTTCTTCTTCAAATT
TTTCCAATAACCTAAATTTAAATTCAAACCTTGCTGGTAAGGAGATGTTA
TCATTCTCCAGTCAACAAAAATCAGGGCATCAATTTAGATCTCTCCGCGT
GTGTGGTCTCTTTGGAGGGAAGAAAGATAATAATGAGAAAGGTGATGATG
CTCCTTCAAAGGCAGGAATTCTTGGAAATATGCAGAATCTATATGAGACT
GTGAAAAAGGCACAAATGGTGGTTCAAGTTGAGGCAGTGCGGGTGCAAAA
AGAACTGGCTGCAGCTGAGTTTGATGGTTATTGTGAGGGTGAGCTGATTA
AGGTAACATTATCTGGAAACCAGCAACCAGTACGCACTGAGATCACAGAG
GCGGCAATGGAATTAGGTGCAGAAAAACTTTCACTCTTAGTTACTGAGGC
ATACAAGGATGCACACCAGAAGAGTGTACTGGCCATGAAGGAGAGAATGA
GTGATCTTGCTCAGAGCTTAGGAATGCCTCAAGGTCTAAGTGAGGGATTA
AAGTAAGAACGTCCACTCACCAGTATCTAAGATAGAGCTTCAATTTTGTC
TACAGACCAGGCTGAATGGCAATCCATATTGTGATCTTAAGATTTACTCA
GCTGTTCAATATCATTCTGGCTTAAATTGAGTAGAGTAACTCTAGTTGGA
ACTTGTGATCTTTGTTCACCTCCCCCATTGTAACAATTACAGGAAATTTG
ACCTTTTTTTGTTGATGCATTTATAATTATAGTTTTTTTTTTTT
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