DY256792

Overview
NameDY256792
Unique NameDY256792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9644 contig Ccv1_Contig9644:10..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 2
Query:  215 LHDTVKEGWI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 550
            L D V  GW  S   +   +  + PP  +ASG    +   M         YRGVR+RPWGKFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNFP LI S
Sbjct:   50 LRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM--------QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 65/135 (48.15%), Postives = 82/135 (60.74%), Query Frame = 2
Query:  215 LHDTVKEGWISFDQLDGKSTPH--------APPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNMA 595
            L D +  GW  F+   G+            +P +  A+      AA + R  H    YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AA+AYD+AA++MRGSKA LNFP  I  N EP+P  +T K  A
Sbjct:   57 LKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAA-----PAAELPRGRH----YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLN-EPEPVRVTAKRRA 181          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 63/130 (48.46%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  215 LHDTVKEGWISFD----QLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRV--NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 586
            L D +  GW  F+    ++  +      P           A T T +  V    +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNFP  I  N EP+P  +T K
Sbjct:   48 LSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLN-EPEPVRLTVK 176          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  359 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 586
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNFP  I  N EP+P  +T K
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLN-EPEPVRLTAK 172          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  317 QKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 586
            +KA  +T       +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYD AAF+MRGS+A LNFP  + S  EP P  IT K
Sbjct:  102 KKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSG-EPDPVRITSK 190          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  359 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 586
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP  + S  EP P  I  K
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSG-EPDPVRIKSK 221          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  359 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 586
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY++ E AALAY +AAF+MRG+KA LNFP  I  N EP+P  +T K
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLN-EPEPVRVTVK 180          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  362 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 550
            YRGVR+RPWGK+AAEIRD  ++G+R+WLGT++T E AALAYDRAAF+MRG+KA LNFPS I +
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVN 121          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  248 FDQLDGKSTPHAPPQAQASGFR------LQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 535
            F Q++G+S+  + P+  +S         ++KA     E+  R +YRGVR+RPWGKFAAEIRD  K GSR+WLGT+++   AA AYD AAFK+RG KA LNFP
Sbjct:   67 FLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDAR-HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of DY256792 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  206 CEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASN 553
            C  L ++    ++S  +L G+  P +    Q+S   LQ+ +   +      NYRGVR+RPWGK+AAEIRD  K  +R+WLGT+DT E AALAYD+AAF+ RG KAKLNFP  I  N
Sbjct:   26 CSTLSESDVSDFVS--ELTGQPIPSSIDD-QSSSLTLQEKSNSRQR-----NYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVN 132          
The following BLAST results are available for this feature:
BLAST of DY256792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
ERF99_ARATH5.943e-2856.64Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_TOBAC2.337e-2448.15Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY6.799e-2448.46Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_TOBAC1.160e-2369.74Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF101_ARATH7.518e-2361.11Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH1.282e-2268.42Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC2.187e-2267.11Ethylene-responsive transcription factor 1 OS=Sola... [more]
PTI5_SOLLC9.190e-2171.43Pathogenesis-related genes transcriptional activat... [more]
EF106_ARATH1.568e-2050.98Ethylene-responsive transcription factor ERF106 OS... [more]
EF112_ARATH7.780e-2048.28Ethylene-responsive transcription factor ERF112 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AG11ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256792 ID=DY256792; Name=DY256792; organism=Citrus clementina; type=EST; length=712bp
GGGCGCTGCAATTAATTGAATCATACACAGTACAGATCACTCTCAAATCC
AAGAAAACACAGTAAAATCATAACATCATATTCCCCGGCAAATTAAATTC
AAGCTTAACTTTTCGTTTACAGATTAAAGTTTCAGCTTCAGTGATACACA
TAAACTCTTGAACTCAAGCCCTAACTCTGATTCAATCCATTGAAATATGG
AGGATTGCGAAGCTTTACACGACACTGTTAAGGAGGGGTGGATTTCGTTT
GATCAGCTTGATGGAAAGTCGACGCCTCATGCTCCGCCTCAGGCTCAGGC
TAGTGGATTTCGTTTACAGAAGGCAGCCACGATGACACGTGAGATTCACG
TGCGTGTAAATTATCGAGGTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCT
GCGGAGATAAGGGATCGTAAAAAGAATGGCTCACGACTTTGGCTGGGGAC
CTATGATACGCCTGAGGGTGCTGCGTTGGCTTATGATAGAGCCGCTTTCA
AGATGCGCGGCTCAAAAGCCAAGCTTAATTTTCCAAGCCTCATTGCCTCA
AACGTTGAGCCTCAGCCTCACGGAATTACGAAAAAGAATATGGCTTCTTC
TTCGTCATCCTCATCCATCACTGCAGATTAAATCTCCGAATTTGGGTTTA
ATTAGCTGAGAAATAATATTTCTACTTATTTTTGAAGTAATTGACATTAA
TTCGCCTTTTAC
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