DY256904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=2 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 5.100e-78 Identity = 159/225 (70.67%), Postives = 179/225 (79.56%), Query Frame = 1 Query: 163 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 837 MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEK AARDLI VD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+DVQKLMDDT +AKAYQDE+NAILGEKLSAEDEE+ILAEFDNLE+QL V EMPEVPT+ SEE EKLDLP+VPTK PVAS +AEI PAE++TK +V+EEPLPA Sbjct: 1 MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTK-ESEESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: VP202_ARATH (Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=2 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 6.893e-75 Identity = 158/226 (69.91%), Postives = 171/226 (75.66%), Query Frame = 1 Query: 163 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 837 MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEK AARDLI VD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L V++MPEVP TE EE EK+DLP+VPTK PVAS STKR+V+EEPL A Sbjct: 1 MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMPEEPEKMDLPDVPTKAPVASN----------ETTSTKRKVLEEPLEA 216
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_DANRE (Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 5.009e-25 Identity = 68/201 (33.83%), Postives = 108/201 (53.73%), Query Frame = 1 Query: 163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 759 MGNLF KK ++T+ DRA+L LK QR KL QYQ+++ ++ E+ A+ L+ + + N+E+ + DIE A + V E LK G + +K + +++E+V+K+MD+T +A YQ +I+ +L L+ EDEE +LAE + + A E+PEVP E +LP VP + PV + Sbjct: 1 MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE---------ELPEVPEQEPVREK 192
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHM6A_XENLA (Charged multivesicular body protein 6-A OS=Xenopus laevis GN=chmp6-A PE=2 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 1.044e-22 Identity = 65/201 (32.34%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 163 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEG-PSEEQEKLDLPNVPTKVPVAS 756 MGNLF +K ++T+ D+A+L LK QR KL QYQ+++ ++ E+ A+ L+ D + N+E+ + DIE A + V E LK G +K + +++E+V+++MD+T+E YQ +I+ +L L+AEDEE IL E + + + E+PE P+E P EK + N P +A+ Sbjct: 1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSIEEVERIMDETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAITQE--DLELPEAPSEPLPDTIPEKQAVKNKPKPQMIAA 199
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHM6B_XENLA (Charged multivesicular body protein 6-B OS=Xenopus laevis GN=chmp6-B PE=2 SV=3) HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22 Identity = 66/201 (32.84%), Postives = 108/201 (53.73%), Query Frame = 1 Query: 163 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEE-QEKLDLPNVPTKVPVAS 756 MGNLF +K ++T+ D+A+L LK QR KL QYQ+++ ++ E+ A+ L+ D + N+E+ + DIE A + V E LK G +K + +++E+V+K+M++T+E YQ +I+ +L L+AEDEE IL E + + + E+PE P+E S+ EK + N P VA+ Sbjct: 1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSIEEVEKIMEETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAITQE--DLELPEAPSEPLSDTVPEKQAVKNRPKPQLVAA 199
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_DICDI (Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 8.842e-22 Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = 1 Query: 181 KKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLP 726 K+ KI+ DRA+L+LK QR KL YQ Q+ + A++ L N+E+ +A++E A Q +FESLK G ++K IQ E++LEDV+ LM++T EA YQ++I+ L K S E+E+++L E D +E QL Q+ P+V P + K++LP Sbjct: 14 KEDKISKTDRAVLNLKIQRDKLKNYQTQVLEIA-----IAKECSKAGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPKV----PETQLPKIELP 186
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_CHICK (Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 5.731e-21 Identity = 65/202 (32.18%), Postives = 107/202 (52.97%), Query Frame = 1 Query: 163 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNL-EAQLAVQEMPEVPTEG-PSEEQEKLDLPNVPTKVPVAS 756 MGNLF +K ++T+ D+A+L LK QR KL QYQ+++ +E E+ AR L+ D + N+E+ + DIE + V E LK G + + +++E+V++++ +T++A YQ +I+ IL L+ EDE+ IL E + + + QL E+P+VP+E P E E + N P VA+ Sbjct: 1 MGNLFGRKRRSRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQEQL---ELPDVPSEPLPEEPPEATPVKNRPKPELVAA 199
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_HUMAN (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 2.408e-19 Identity = 60/201 (29.85%), Postives = 102/201 (50.75%), Query Frame = 1 Query: 163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 759 MGNLF +K ++T+ D+AIL LK QR KL QYQ+++ +E E+ AR L+ + + ++E + IE + V E L+ G + + +++E+V++++D+T+EA YQ +I+ +L + EDE+ IL E + + E+PEVP+E E+ +P VPV +R Sbjct: 1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSEPLPEK--------IPENVPVKAR 191
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_PONAB (Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 3.145e-19 Identity = 60/201 (29.85%), Postives = 102/201 (50.75%), Query Frame = 1 Query: 163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 759 MGNLF +K ++T+ D+AIL LK QR KL QYQ+++ +E E+ AR L+ + + ++E + IE + V E L+ G + + +++E+V++++D+T+EA YQ +I+ +L + EDE+ IL E + + E+PEVP+E E+ +P VPV +R Sbjct: 1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSEPLPEK--------IPEDVPVKAR 191
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: VPS20_SCHPO (Vacuolar protein sorting-associated protein 20 OS=Schizosaccharomyces pombe GN=vps20 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 7.006e-19 Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 178 VKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVAS 756 V KI D DR+ILS+K QR KL +Y ++L+ + + E AR + G L N+EQ L+ IE QK V L+ GTN I+ +Q+++ LE V ++ +D +EA +Y DE+N +L ++S + E+EI E D+L + +++ ++ G + LP+VP K + S Sbjct: 3 VNSSKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTGVDVLPSVPLKNAIPS 195 The following BLAST results are available for this feature:
BLAST of DY256904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY256904 ID=DY256904; Name=DY256904; organism=Citrus clementina; type=EST; length=1036bpback to top |