DY256946

Overview
NameDY256946
Unique NameDY256946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1012 contig Ccv1_Contig1012:1..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUM2_ARATH (Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.724e-53
Identity = 103/116 (88.79%), Postives = 110/116 (94.83%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 350
            +GGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK+AHKEG TLK AA+KLGVL SEEFD LVVPEKMIGPSD
Sbjct:  384 IGGSNGHFELNVFKPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGPSD 499          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUM1_ARATH (Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.724e-53
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 350
            VGGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +EEFD LVVPEKMIGPSD
Sbjct:  377 VGGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 492          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_MOUSE (Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            VGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  393 VGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_MACFA (Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            VGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  396 VGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_HUMAN (Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.344e-39
Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            VGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  396 VGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.997e-39
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            VGGSNGHFELNVFKPMI   +L+S RLLGDAS SF  NCV GI+AN ERI+KL+ ESLMLVT+LNP IGYD AA +AK AHK+G+TLK+AALKLG LN ++F+  V P  M+GP
Sbjct:  395 VGGSNGHFELNVFKPMIIKNVLNSARLLGDASVSFTNNCVVGIEANTERINKLMSESLMLVTALNPHIGYDKAAKIAKTAHKDGSTLKEAALKLGFLNEQQFEEWVRPHDMLGP 508          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_RAT (Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.221e-39
Identity = 78/114 (68.42%), Postives = 93/114 (81.58%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            VGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P+ M+GP
Sbjct:  393 VGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKKTAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_PIG (Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.591e-38
Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            VGGSNGHFELNVFKPM+   +LHS RLLGDA+ SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P  M+GP
Sbjct:  352 VGGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPRDMLGP 465          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_RHIOR (Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.382e-37
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 350
            V GSNG FELNVFKP++   L+ S+RL+ DAS SF KNCV GI+AN ++IS +++ESLMLVT+LNP IGYD AA  AKKAHKEGTTLK+AAL LG L SEEFD  V PE MI   D
Sbjct:  379 VAGSNGQFELNVFKPVMIKNLIQSIRLISDASISFTKNCVVGIEANEKKISSIMNESLMLVTALNPHIGYDKAAKCAKKAHKEGTTLKEAALSLGYLTSEEFDQWVRPEDMISAKD 494          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.167e-36
Identity = 76/113 (67.26%), Postives = 88/113 (77.88%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            + GSNGHFELNVFKP+I   +L S+RL+ DAS SF K+CV GI+A+ +RI +LLHESLMLVT+LNP IGYD AA  AKKAHKE TTLK+A L LG   SEEFD  V P KMIG
Sbjct:  370 IAGSNGHFELNVFKPVIIKNVLSSIRLIADASVSFTKHCVVGIKADEKRIDQLLHESLMLVTALNPYIGYDKAAKAAKKAHKEKTTLKEACLSLGFTTSEEFDKWVDPSKMIG 482          
The following BLAST results are available for this feature:
BLAST of DY256946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUM2_ARATH3.724e-5388.79Fumarate hydratase 2, chloroplastic OS=Arabidopsis... [more]
FUM1_ARATH3.724e-5389.66Fumarate hydratase 1, mitochondrial OS=Arabidopsis... [more]
FUMH_MOUSE2.344e-3968.42Fumarate hydratase, mitochondrial OS=Mus musculus ... [more]
FUMH_MACFA2.344e-3968.42Fumarate hydratase, mitochondrial OS=Macaca fascic... [more]
FUMH_HUMAN2.344e-3968.42Fumarate hydratase, mitochondrial OS=Homo sapiens ... [more]
FUMH_DANRE3.997e-3969.30Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_RAT5.221e-3968.42Fumarate hydratase, mitochondrial OS=Rattus norveg... [more]
FUMH_PIG2.591e-3867.54Fumarate hydratase, mitochondrial OS=Sus scrofa GN... [more]
FUMH_RHIOR6.382e-3766.38Fumarate hydratase, mitochondrial OS=Rhizopus oryz... [more]
FUMH_DICDI3.167e-3667.26Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256946 ID=DY256946; Name=DY256946; organism=Citrus clementina; type=EST; length=788bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGA
TTTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCT
AAAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGA
GGGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTG
AAGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGAC
TAACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTA
TCATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTC
AACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTTAA
AAAAACAAAGAAAGGGGCACCAAAAAAAAAACTATATTCTTTGAGGTTTT
CCCAGGAGGAGGCTTCATTGATATGTCATTTCACGTGGTTGACAAATAAC
CGATTGGTAAGCCAAACAAGGGGAAAACCTCCCTCATTTTTTTGGGCCGA
CATGGGAATAAAAAAATGGTTAAAACCAAAAAAAAATGAAAAAAAATTTT
AAAGGCTAAAGGGACCCTTAAAATGAACCCCCCCAAATTTTTTTTTAATT
GAAAAAAATTTTTTTCAAAAAAAACATTATTTTGGAAG
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