DY256961

Overview
NameDY256961
Unique NameDY256961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length313
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:728..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.335e-19
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 216
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  249 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.662e-19
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    7 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 189
            D  AGR PGYG+ TNI+NGG+ECG+G +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  269 DAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 216
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  249 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 ANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 189
            A+D  AGR+PGYG  TNIINGG+ECG+G +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  255 ADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 216
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  247 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.151e-18
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 ANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 192
            A D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  188 AADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.151e-18
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 ANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 216
            A D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  258 AGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.810e-18
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 ANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 192
            A D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  180 AADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.810e-18
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 216
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  253 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of DY256961 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.670e-18
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 ANDVNAGRLPGYGLTTNIINGGIECGYGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 204
            A D  AGR+PGYG+ TNIINGGIECG GG N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  229 AADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
The following BLAST results are available for this feature:
BLAST of DY256961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CHI1_SOLTU4.335e-1954.29Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ5.662e-1963.93Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_SOLTU1.261e-1852.86Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ1.261e-1861.90Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_SOLTU1.261e-1852.86Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIQ_TOBAC2.151e-1860.94Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI1_TOBAC2.151e-1854.17Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_CARPA2.810e-1859.38Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIC_SOLLC2.810e-1852.86Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIB_POPTR3.670e-1860.87Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AH08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256961 ID=DY256961; Name=DY256961; organism=Citrus clementina; type=EST; length=313bp
GCAAATGACGTAAACGCTGGCCGGCTTCCGGGATACGGTCTAACCACAAA
TATAATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGCTGTAC
GTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAG
CCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCT
GATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGC
TTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGA
CAACTAAACTGTT
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