DY256987

Overview
NameDY256987
Unique NameDY256987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256987_ssr36 microsatellite DY256987_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9493 contig Ccv1_Contig9493:421..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2N_ARATH (Hydroxyacylglutathione hydrolase 2, mitochondrial OS=Arabidopsis thaliana GN=At2g31350 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.683e-91
Identity = 157/210 (74.76%), Postives = 183/210 (87.14%), Query Frame = 3
Query:    9 RNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            RNLTYI              ELK RYGAKVIGS +DKDRIPGID+ L DGDKWMFAGHEVHV+DTPGHT+GHIS YFPGS A+FTGDT+FSLSCGKLFEGTP QM +SLQKI SLPDDT++YCGHEYTLSNSKFALS+EPNNE LQSYAAH+A+LRSK +PTIPTT+KMEK+CNPFLR+S+ +IR++LRIP+ AD++EALG+IR+AKD+F
Sbjct:  115 RNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALGIIRKAKDDF 324          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2M_ARATH (Hydroxyacylglutathione hydrolase 1, mitochondrial OS=Arabidopsis thaliana GN=GLX2-1 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 6.001e-81
Identity = 144/212 (67.92%), Postives = 169/212 (79.72%), Query Frame = 3
Query:    3 KNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            KN NLTYI              ELK RYGAKVIGS VDKDRIPGIDI+L D DKWMFAGHEV ++DTPGHT+GHISFYFPGSA +FTGD ++SLSCG L EGTP QM SSLQKI+SLPDDTN+YCG E T  N KFALS+EP NE LQSYA  +A LRS+G+P+IPTT+K+EK+CNPFLR SS +IR+SL IPD+A ++EAL  I++A+D F
Sbjct:  120 KNWNLTYILNTHHHDDHIGGNAELKERYGAKVIGSAVDKDRIPGIDILLKDSDKWMFAGHEVRILDTPGHTQGHISFYFPGSATIFTGDLIYSLSCGTLSEGTPEQMLSSLQKIVSLPDDTNIYCGRENTAGNLKFALSVEPKNETLQSYATRVAHLRSQGLPSIPTTVKVEKACNPFLRISSKDIRKSLSIPDSATEAEALRRIQRARDRF 331          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_OCHA4 (Hydroxyacylglutathione hydrolase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gloB PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.459e-50
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LKA+YG  +IG   ++ +IPGID  + DGD++ F    V VI TPGHT G +S+Y P + AVFTGDTLF+L CG+LFEGTP  MF SLQK+++LP DT VYCGHEYT SN++FAL+I+P N AL+  AA IA+LR+    T+P++I +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   73 LKAKYGVSIIGPKAEETKIPGIDRTVKDGDEFTFGLFRVKVIATPGHTAGEVSYYLPDAKAVFTGDTLFALGCGRLFEGTPLTMFQSLQKLVALPGDTAVYCGHEYTESNARFALTIDPANSALKERAAEIARLRAADRMTLPSSIALEMATNPFLRWHDAGIRSRLGLQD-APDEAVFAEIRKRKDMF 260          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_RHIME (Hydroxyacylglutathione hydrolase OS=Rhizobium meliloti GN=gloB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.033e-48
Identity = 96/208 (46.15%), Postives = 131/208 (62.98%), Query Frame = 3
Query:   15 LTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LT+I               LK R+G  +IG   +  +IPGID  +  GD++ FAGH V VI+TPGHT GH+ ++ P    +F  DTLF+L CG+LFEGT   M+ SL ++M+LPDDT +Y GHEYTL+N+ FA++++P N AL+  AA I + RS G  T PTT+ +EK  NPFLR   P+IR  L + + A D+     IR+ KDNF
Sbjct:   50 LTHILTTHHHGDHVAANASLKERFGLTIIGPKNEASKIPGIDRTVGHGDRFDFAGHPVDVIETPGHTSGHVCYHLPEDKLLFAADTLFALGCGRLFEGTADTMWQSLSRLMALPDDTAIYFGHEYTLANAHFAITVDPENSALKERAAEIEETRSDGGFTAPTTMGLEKRTNPFLRAGDPKIRALLGM-EKASDAAVFAEIRKRKDNF 256          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_MARMM (Hydroxyacylglutathione hydrolase OS=Maricaulis maris (strain MCS10) GN=gloB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.033e-48
Identity = 92/189 (48.68%), Postives = 125/189 (66.14%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            ++A  GAKV+    D+ RIPGI + + DGD      H+  V  TPGHT GH+ ++ P     F GDTLF+L CG+LFEGTP +M+ SL ++ +LPD+T +YC HEYT +N++FALSI+P+N  LQ YAA +   R++G PT+PTTI  EK+ NPFLR   P IR  L + +  DD E    IR+ KD+F
Sbjct:   69 IQALTGAKVVAPRYDRHRIPGISMEVEDGDVISLGDHKAKVFYTPGHTMGHVCYHMPMDGIAFVGDTLFALGCGRLFEGTPAEMWHSLSRLAALPDETRIYCAHEYTEANARFALSIDPDNHDLQVYAAMVEGERARGEPTVPTTIAAEKAANPFLRPDDPAIRARLGM-EHDDDEEVFAEIRRRKDSF 256          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSU (Hydroxyacylglutathione hydrolase OS=Brucella suis GN=gloB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.128e-48
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A  IA+LR+    T+P+TI +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   70 LKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQD-APDEAVFAEIRKRKDMF 257          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSI (Hydroxyacylglutathione hydrolase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=gloB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.128e-48
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A  IA+LR+    T+P+TI +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   73 LKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQD-APDEAVFAEIRKRKDMF 260          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_BRUO2 (Hydroxyacylglutathione hydrolase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gloB PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.128e-48
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A  IA+LR+    T+P+TI +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   70 LKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQD-APDEAVFAEIRKRKDMF 257          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_BRUME (Hydroxyacylglutathione hydrolase OS=Brucella melitensis GN=gloB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.128e-48
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A  IA+LR+    T+P+TI +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   70 LKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQD-APDEAVFAEIRKRKDMF 257          
BLAST of DY256987 vs. ExPASy Swiss-Prot
Match: GLO2_BRUMB (Hydroxyacylglutathione hydrolase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=gloB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.128e-48
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   72 LKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 638
            LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A  IA+LR+    T+P+TI +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   73 LKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQD-APDEAVFAEIRKRKDMF 260          
The following BLAST results are available for this feature:
BLAST of DY256987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 290
Match NameE-valueIdentityDescription
GLO2N_ARATH1.683e-9174.76Hydroxyacylglutathione hydrolase 2, mitochondrial ... [more]
GLO2M_ARATH6.001e-8167.92Hydroxyacylglutathione hydrolase 1, mitochondrial ... [more]
GLO2_OCHA42.459e-5052.91Hydroxyacylglutathione hydrolase OS=Ochrobactrum a... [more]
GLO2_RHIME1.033e-4846.15Hydroxyacylglutathione hydrolase OS=Rhizobium meli... [more]
GLO2_MARMM1.033e-4848.68Hydroxyacylglutathione hydrolase OS=Maricaulis mar... [more]
GLO2_BRUSU5.128e-4850.26Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]
GLO2_BRUSI5.128e-4850.26Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]
GLO2_BRUO25.128e-4850.26Hydroxyacylglutathione hydrolase OS=Brucella ovis ... [more]
GLO2_BRUME5.128e-4850.26Hydroxyacylglutathione hydrolase OS=Brucella melit... [more]
GLO2_BRUMB5.128e-4850.26Hydroxyacylglutathione hydrolase OS=Brucella melit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3BE12ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256987 ID=DY256987; Name=DY256987; organism=Citrus clementina; type=EST; length=827bp
GGAAAAACCGAAATCTGACTTACATTCTAAATACACATCATCATCATGAT
CACACCGGTGGTAATTTGGAGCTAAAAGCTAGGTACGGTGCAAAGGTGAT
TGGTTCAGGAGTAGACAAGGATAGGATCCCTGGCATTGATATAGTTTTGA
ATGATGGAGACAAATGGATGTTTGCTGGTCATGAGGTGCACGTGATTGAT
ACGCCTGGCCATACCCGAGGTCATATTAGCTTCTACTTTCCTGGATCAGC
GGCAGTTTTTACTGGGGACACTTTGTTCAGCTTATCCTGTGGCAAGCTTT
TTGAAGGAACCCCTGGGCAGATGTTTTCTTCCCTTCAGAAGATAATGTCT
CTGCCAGATGATACAAATGTATATTGTGGTCATGAATATACGCTGAGTAA
TTCAAAATTTGCATTGTCCATAGAACCCAACAATGAGGCCCTTCAATCAT
ATGCAGCGCACATAGCCCAACTTCGAAGCAAGGGTGTGCCCACGATTCCA
ACAACAATAAAGATGGAGAAGTCATGTAATCCATTTCTTCGCACGTCAAG
TCCAGAAATCCGGCAGTCATTGCGCATTCCAGACACTGCAGATGATTCAG
AAGCCTTAGGTGTCATTCGTCAAGCAAAGGATAACTTCTAGGATCGTTTT
AACTACTATTGTTTGTGTACAGAGAGTAGCTGGTACCAATATGAAATAAA
ACCACCAATGTATACATTTTAACCCTTTTTTTTTTCAATTTTAATTTTTA
CTTTGTCATTTGTCCCCAAGTTATTTGAAATTTCCATGTTCTCTTGAAAT
GGAGTTTAATGCAATGGGCTTTTTGGG
back to top