DY256990

Overview
NameDY256990
Unique NameDY256990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9547 contig Ccv1_Contig9547:4..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 3.027e-69
Identity = 124/174 (71.26%), Postives = 138/174 (79.31%), Query Frame = 2
Query:   71 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 589
            M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+Q                      PLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 1.150e-68
Identity = 121/174 (69.54%), Postives = 137/174 (78.74%), Query Frame = 2
Query:   71 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 592
            MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ +                       PLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.976e-44
Identity = 84/167 (50.30%), Postives = 110/167 (65.87%), Query Frame = 2
Query:   89 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 589
            D++S A  V++  H   +  Q+ LDKT PH +YRWI  L ++ IY +RV++V+                      P  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:   29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 4.263e-39
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 2
Query:   74 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 586
            + +G       S V ++     ++YQ +LDK+TPH   RW+ TL +  IY +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.116e-38
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 2
Query:  116 SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 592
            S++ H     YQYYLD+ TPH  +RW+  L+ L  +  R+  +Q                      P +DP +E  D   GP+LP+K +DEF+PF+RRLPEFKFW+S  KA  IA   TFF  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF +
Sbjct:   13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.763e-38
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 2
Query:   74 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 586
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.763e-38
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 2
Query:   74 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 586
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.609e-38
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 2
Query:   74 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 586
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.609e-38
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 2
Query:   74 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 586
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of DY256990 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.713e-38
Identity = 80/173 (46.24%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   74 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 586
            + IG       S V ++     ++YQ +LDK+TP+   RWI TL +  IY +RV+ +Q                      P VDP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S TK   +A   TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:    5 DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
The following BLAST results are available for this feature:
BLAST of DY256990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH3.027e-6971.26Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH1.150e-6869.54Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH1.976e-4450.30Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN4.263e-3946.24Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_CAEEL2.116e-3846.91Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]
RER1_RAT2.763e-3844.51Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE2.763e-3844.51Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB3.609e-3845.09Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN3.609e-3845.09Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK4.713e-3846.24Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3BF04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256990 ID=DY256990; Name=DY256990; organism=Citrus clementina; type=EST; length=1175bp
GAAATCAATTTGAGTCCTTTTACGTGAACATCGAAAGACTCGTTTCAAGG
ACTTTTCATACTTAGATTGAATGGAAGGAATTGGAGGCGACACTGCCTCG
GCGGCATCCCCTGTATCACAATGGGGACATGATGCTTGGAGGCTATATCA
GTATTACCTGGACAAGACTACTCCACATGCAGTTTATAGGTGGATTGGAA
CCCTTGTAATTTTGGCAATCTACTGTTTGCGGGTTTTTTATGTGCAAGGA
TTCTACATCATATCCTATGGTCTTGGGATCTATCTCCTGAATTTGCTTAT
TGGGTTTTTGTCGCCTCTGGTTGATCCTGAAATCGAAGTCGCTGATGGGC
CTTTGTTGCCGACAAAGGGTTCTGATGAATTCAAGCCTTTTATTCGCCGA
CTCCCAGAGTTTAAATTTTGGTACTCCATGACCAAGGCTTTCTGCATAGC
TTTTGTAATGACATTCTTTTCTGTGTTTGATGTTCCTGTGTTTTGGCCCA
TATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGACGCCAA
ATCGCACACATGATCAAATACAGATATATCCCGTTCAACATTGGAAAACA
GAAGTATGGTGGTAAGAAACCTTCATCAAGTGGCGGTGGCTCCCGTGGGG
ACTGAAGCAGAACTTATTCACAGAGCCAGTAGAAAAAGGACTGGATGGGG
ATAAAAAAATAGGTTATGGGAAGATATTATAATTGAATTTTTTCCTTTCA
AGGGACATGCACTTGGTTATTATGAATGAAGCTTATAGTAGACATAAAGT
TCAATAGTGCGGGATTGCTAAAATGTTGCAGAATTGAAACTTTAATGTTT
ACGCTCATGTTATGAAGATTCCAAGATTGTTGGCAATGTAAATGCATGAC
CCATTATAACAAAAATTTTATGGGGAAATTTTTTCATCGTTTAATAATTA
AATGGAATGGTGGTCAAAAGCCCTTTGTCATCCCACATTGGTTAACTGGG
AGAATGGCATGGAAAACACTATTTGTATTTAAAAATGGCTTGGTTACAAA
AAAATTTGCATTTTTTACCTTTACTTGAAGGGGGAAAAGGGATTTCTGGG
GAATGTGAGCCCTTTTTTGCCCCCTTTGGGTTCCGGGAGAAAAAAAAATT
TTTTGGTTTCCTCTCTTTTTTTTTT
back to top