DY257001

Overview
NameDY257001
Unique NameDY257001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257001_ssr522 microsatellite DY257001_ssr522:522..533. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14196 contig Ccv1_Contig14196:1489..2068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257001 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GRRIPFVELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFKRKTYWNRY 180
            GRRIP  ELFARID+VDASTVKRVAN++IYD+DIAI+A+GPIQ LPDYN F+R+TYWNRY
Sbjct:  472 GRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAISAIGPIQDLPDYNKFRRRTYWNRY 531
The following BLAST results are available for this feature:
BLAST of DY257001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MPPB_ARATH1.441e-2280.00Probable mitochondrial-processing peptidase subuni... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3BH08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257001 ID=DY257001; Name=DY257001; organism=Citrus clementina; type=EST; length=573bp
GGTCGAAGAATCCCATTTGTTGAATTGTTTGCTAGGATAGACTCCGTAGA
TGCAAGCACTGTCAAGCGCGTTGCAAACAGATTTATTTACGACAGGGATA
TCGCAATTGCTGCAATGGGTCCAATTCAAGGTTTACCCGACTACAACTGG
TTCAAACGCAAAACCTACTGGAATAGATACTAAGTTATCTCATGGTTGTT
CATTACTGCATCCCCGCCTTCCTGGGCGGAGATTTCAAACAATTTTTGGG
TTGCAATTTACACAATCAATGCCCTTGGGAGAGGCTTCAGGGCTATGGTA
TTTTATTGAATTCTTTTCTAGCTCTTGCTTCTGTAACTTCATAATTTGTT
CAGGAAATAAGTAAGCTGTCTTCAGTGATTTGGCCCTCGGATTTTCATTG
CTTTGAGCTGAACAGCTCAAGCAACAGCTTTGAATGATGATAAATTTTCA
GCTGCATCACATCATATTGCCTTTCGTTTTCAAGGCATTAAAGTTTCTGG
TTGGCTGCATTGGTGGCTCAACTGCCTGCCTGCGATTTGATTGATAAATA
ATAATTAAGTGTTACTGTTGAAT
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