DY257060

Overview
NameDY257060
Unique NameDY257060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257060 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.998e-16
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 2
Query:    2 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 172
            L L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EAL
Sbjct:  660 LALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of DY257060 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.745e-15
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 2
Query:    2 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 178
            + L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL I
Sbjct:  656 MALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714          
BLAST of DY257060 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.888e-15
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 2
Query:    2 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 172
            + L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL
Sbjct:  659 MALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREAL 715          
The following BLAST results are available for this feature:
BLAST of DY257060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DXS_ARATH5.998e-1668.42Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ1.745e-1564.41Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN3.888e-1564.91Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3DC08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257060 ID=DY257060; Name=DY257060; organism=Citrus clementina; type=EST; length=404bp
TCTAACCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGG
TGCTTCCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAA
GAATCAGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTT
AGGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAA
CAACATCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTGGGGGTGTTA
TACACTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAA
CCATGAAGCATTACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTT
GTTTCTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGA
TCTT
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