DY257743

Overview
NameDY257743
Unique NameDY257743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.243e-47
Identity = 87/108 (80.56%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    2 EYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 325
            +YVP+D++SIS FEPPQSPE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+  +IP PL RPQHV+LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct:  182 DYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.624e-22
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 2
Query:    5 YVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 325
            +VP++ ESI  FE P SP+ SY      AED+AKEP  VPP L +TLL       E     ++PQHVVLNH+++++G +  S+VALG THRF +KY+TVVLYK + R
Sbjct:  181 FVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGTT----EETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 2
Query:   17 DLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 313
            D+  +SS  P    +  Y +     E+  K PP++PPHL   +LN        P  L  P HV+LNHLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:  175 DVSELSSSPPGPYHQEPYMS---KPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 2
Query:   89 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 313
            +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct:  197 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSTKD--SVMVLSATHRYKKKYVTTLLYK 269          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 2
Query:   17 DLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 313
            D+  +SS  P    +  Y +     E+  K PP++PPHL   +LN        P  L  P HV+LNHLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:  175 DVSELSSSPPGPYHQEPYIS---KPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: AAKB1_BOVIN (5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 2
Query:   17 DLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 313
            D+  +SS  P    +  Y +     E+  K PP++PPHL   +LN        P  L  P HV+LNHLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:  175 DVSELSSSPPGPYHQEPYIS---KPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 2
Query:   89 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 313
            +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct:  197 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 269          
BLAST of DY257743 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 2
Query:   89 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 313
            +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct:  198 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 270          
The following BLAST results are available for this feature:
BLAST of DY257743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
KINB2_ARATH4.243e-4780.56SNF1-related protein kinase regulatory subunit bet... [more]
KINB1_ARATH1.624e-2250.47SNF1-related protein kinase regulatory subunit bet... [more]
AAKB1_MOUSE3.752e-1139.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB2_RAT4.900e-1145.335'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB1_RAT4.900e-1139.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_BOVIN4.900e-1139.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB2_MOUSE8.359e-1145.335'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_HUMAN8.359e-1145.335'-AMP-activated protein kinase subunit beta-2 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AH06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257743 ID=DY257743; Name=DY257743; organism=Citrus clementina; type=EST; length=480bp
GGAATATGTTCCAGATGACCTTGAAAGCATATCTAGTTTTGAGCCTCCTC
AGTCTCCAGAGACGAGCTACAACAACTTGCAACTGACTGCTGAGGATTTT
GCAAAGGAACCGCCATTGGTTCCTCCACACCTTCAAATGACACTGCTCAA
TGTGCCTGCATCATACATGGAAATTCCTCCTCCTTTGTCAAGACCTCAAC
ATGTGGTCCTTAACCATCTCTATATGCAAAAAGGGAAAAGTGGCCCGTCT
GTGGTGGCACTTGGTTCAACACATCGATTTTTAGCCAAATATGTGACGGT
GGTGCTCTATAAGTCTATGCAGAGGTGATAGTATACTATACCTACGATGA
CTTTATAGTCTTCAATCCCTATATGTAGTTAATATAATTATGGAGAGGTA
GGTGCTATGAGAATGGATAAAGTAGCAAGGAACTTAAAAAGTAATGCAAA
TATTTGATGGCCATGATCCAACAATTTCTT
back to top