DY257775

Overview
NameDY257775
Unique NameDY257775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9943 contig Ccv1_Contig9943:4..1282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257775 vs. ExPASy Swiss-Prot
Match: GLU2B_BOVIN (Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.103e-27
Identity = 70/209 (33.49%), Postives = 102/209 (48.80%), Query Frame = 2
Query:  272 PYREEDHDYTSTSYKTDVDDDLDMSEMTTPSS---PSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSE 871
            P  EED D      + D D++ + S+   P     P+   +               QT    + A   R +++E+   L  ++  I +L Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+   G S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TPA C E
Sbjct:  311 PTEEEDEDEEDEETEEDEDEEDEDSQGEQPKDAPPPAPAPQTASPTEEDRMPPYDEQTQAFINAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELMTPAACPE 519          
BLAST of DY257775 vs. ExPASy Swiss-Prot
Match: GLU2B_MOUSE (Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.193e-27
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  455 AARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGH--STTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSE 871
            A   R +++E    L +++  I SL Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+  H  S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TPA C E
Sbjct:  363 AQEARSKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELMTPAACPE 507          
BLAST of DY257775 vs. ExPASy Swiss-Prot
Match: GLU2B_HUMAN (Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 9.341e-27
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  431 QTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSE 871
            QT      A   R +++E+   L  ++  I +L Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+   G S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TPA C E
Sbjct:  362 QTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPE 514          
BLAST of DY257775 vs. ExPASy Swiss-Prot
Match: GLU2B_SCHPO (Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe GN=gtb1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.710e-12
Identity = 46/170 (27.06%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  434 TPVDKSDAAR----VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKL-QELQHKLDELNKGATS 928
            TP+  S++ R     +++ D + +    ++   + L  +L++  G +  + +  G   + +   Y YKV  Y+   Q+    +  LG++   E +  ++ + NG  CWNGP RS  V + CG++NE+  V E  +CEY+  + +PA CS ++L Q L +  +  N+ A +
Sbjct:  332 TPLTDSESYRRFEAAQRDLDAAEENEKSLEKEHTKLMHELEYHHGWDL-YRAIKGMETKREIGGYTYKVVFYENVFQD----SILLGNFASQEGN--VLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCEYLIKMKSPAACSPDQLKQSLLNTQNSANENAVN 494          
The following BLAST results are available for this feature:
BLAST of DY257775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GLU2B_BOVIN1.103e-2733.49Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH... [more]
GLU2B_MOUSE4.193e-2740.69Glucosidase 2 subunit beta OS=Mus musculus GN=Prkc... [more]
GLU2B_HUMAN9.341e-2739.22Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKC... [more]
GLU2B_SCHPO1.710e-1227.06Glucosidase 2 subunit beta OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257775 ID=DY257775; Name=DY257775; organism=Citrus clementina; type=EST; length=1279bp
GAAGAACTTGGAGAATGGTGTATCTGAAAATACCGAGGAGTTATCAAGGG
AAGAGTTGGGTCGCCTTGTTGCTTCTCGTTGGACGGGAGAAAAGACTGAG
AAGCAATCTGGGGAAGGTGGTGCAATAGCAAATGATGATCAAGGTGAAGA
TGTGCCAGAGTACAACCATGATGATGAAGAGGATAGATATGCTACAGATA
CTGATGATGATTCAGAAAGGTATGACACTGAAAAGTATGATGACAATGAT
GTGGAAGATGATATAGATGAACCTTATAGAGAGGAGGATCATGATTATAC
CAGTACTTCATACAAAACAGATGTAGATGACGACTTGGATATGTCAGAGA
TGACAACTCCAAGTAGTCCATCTTGGTTGGAGAAGATACAACAAACAGTA
CGGAATATTTTGCAGGCTGTTAATTTGTTCCAAACGCCAGTAGACAAATC
AGACGCTGCTCGTGTCCGCAAGGAGTATGATGAGTCTAGCGACAAGTTGT
CTAAAATACAGTCGAGGATATCGAGTTTGACACAAAAGCTTAAGCATGAA
TTTGGGCCAGAGAAGGAGTTCTACTCATTCTACGGTCATTGTTTTGAGAG
CAAGCAGAACAAGTATGTTTACAAAGTCTGTCCGTACAAAAAAGCTACCC
AAGAGGAGGGCCACTCAACGACTCGTCTGGGGAGCTGGGACAAATTCGAG
GACTCATACCACATCATGCTATTTTCAAATGGTGATAAGTGTTGGAATGG
GCCTGATAGAAGTATGAAGGTCCGGCTAAGATGTGGGTTGAAAAATGAGG
TTACTGATGTTGATGAACCAAGCCGCTGCGAATATGTCGCATTATTGTAT
ACCCCTGCTGTTTGCTCAGAGGAAAAGCTTCAGGAACTGCAACATAAACT
AGATGAATTGAACAAAGGAGCAACCTCAGCACCACGATGAACTTTAAAAT
TGTCTTGATAAATTACCCAAAATGCTCCAAAGGATGCTGACTGCTGGAGC
GAATCTCGGTGTTGAAAATTATTAATCCTTCAACCAAATCTGTTGTGGTC
CTGCTTCCTCTTTTCAGCAGGTATTTTTAAAGAAATTTAAAGCAAAATTA
TGAAGTGGCCCTCCTGAAATTTTTAACCTTTTTTAAAAGTGGCCTCCTAA
AAAAAAAAATTTGTAATTTTTTTTTTTTAGGGGGGGGGGAATTGGGGGGG
GTCCAACACCTTCGGGTTTTCTCCCAAAAAAAAAAAAATTTTTTTAAAAA
ATTTTCTTTTTTTTTTTTTCTGTGTCCTT
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