DY257848

Overview
NameDY257848
Unique NameDY257848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10037 contig Ccv1_Contig10037:5..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257848 vs. ExPASy Swiss-Prot
Match: YDR2_SCHPO (Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe GN=SPAC16E8.02 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:   43 SLAWKVAVAAQLICWTGQFLGHGIFEKRAPALLDNLIQALLMAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIK 270
            SL  + A    +ICW  QF+GHG+FEKR PALLDNLIQ+L +AP F  LE        P+ G++ +V +KIRA IK
Sbjct:  100 SLVNRSAAVVHVICWILQFIGHGVFEKRKPALLDNLIQSLFIAPLFAFLET------GPFVGYYPSVVSKIRANIK 169
The following BLAST results are available for this feature:
BLAST of DY257848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YDR2_SCHPO2.669e-1451.32Uncharacterized endoplasmic reticulum membrane pro... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DD03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257848 ID=DY257848; Name=DY257848; organism=Citrus clementina; type=EST; length=473bp
TGTTGGGTTGGCGCCAGTCTGCTGTCTAATAGACTTGGTTTCTCTCTTGC
TTGGAAGGTTGCAGTGGCAGCACAGTTAATCTGTTGGACCGGACAGTTTC
TTGGTCATGGTATTTTTGAGAAAAGGGCACCAGCTCTTCTGGATAACCTC
ATTCAAGCCTTGTTGATGGCTCCTTTCTTCGTGCTGCTCGAGGTCCTCCA
AGTCTTCGGGTATGAACCATATCCAGGATTTCATGCAAATGTTGAAGCAA
AGATACGAGCTGAAATCAAGGAATGGCAAGACAAAAAACAAAAGAAAATT
TCATAGATTAATCCGGGCCCAGTCACCTAAGATCAGTTTCGAAAACTCTT
TGTAAACAAAGTATGAAAGATCCACCGAATACTGTGAATCTGATGTGAAC
ATTTGTATGTACCTATGTAATGTATGCTGGACTCTTAATCAGAGACCCAC
ACTTGAAGCCAAAAAAAAAAAAA
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