DY257935

Overview
NameDY257935
Unique NameDY257935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.136e-41
Identity = 69/109 (63.30%), Postives = 82/109 (75.23%), Query Frame = 3
Query:    6 QGASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            +G S+A+KQP+TWYK TFN PPG+ PL L MG+MGKG +WINGQS+GRHWP               TY + KCRT+C  PSQRWYH+PRSWL P+GNLLVVFEEWGG+P
Sbjct:  606 EGPSMAEKQPLTWYKATFNAPPGDAPLALDMGSMGKGQIWINGQSVGRHWPGYIARGSCGDCSYAGTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDP 714          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.139e-38
Identity = 69/111 (62.16%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    3 AQGASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPH 335
            A+GA +AQKQP+TWYKTTF+ P G+ PL + MG+MGKG +WINGQS+GRHWP               T+ E+KC   C   SQRWYHVPRSWLKPSGNLLVVFEEWGG+P+
Sbjct:  615 AEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQIWINGQSLGRHWPAYKAVGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPN 725          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.787e-37
Identity = 67/110 (60.91%), Postives = 78/110 (70.91%), Query Frame = 3
Query:    6 QGASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPH 335
            +G+ +AQKQP++WYKTTFN P GN+PL L M  MGKG VWINGQS+GRHWP                + E KC T C   SQRWYHVPRSWL P+GNLLVVFEEWGG+P+
Sbjct:  604 EGSLVAQKQPLSWYKTTFNAPDGNEPLALDMNTMGKGQVWINGQSLGRHWPAYKSSGSCSVCNYTGWFDEKKCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPY 713          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.179e-35
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 3
Query:    6 QGASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPH 335
            +G+ +A+KQP+TWYK+TF+ P GN+PL L M  MGKG +WINGQ+IGRHWP               T+TE KC + C   SQRWYHVPRSWLKP+ NL++V EEWGGEP+
Sbjct:  609 EGSLVAKKQPLTWYKSTFDSPTGNEPLALDMNTMGKGQMWINGQNIGRHWPAYTARGKCERCSYAGTFTEKKCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPN 718          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.627e-35
Identity = 64/104 (61.54%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   21 AQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            +QKQP+TWYKT FN PPGN+PL L M  MGKG +WINGQSIGR+WP               TY E KC + C   SQRWYHVPRSWL P+GN LVV EEWGG+P
Sbjct:  607 SQKQPLTWYKTFFNAPPGNEPLALDMNTMGKGQIWINGQSIGRYWPAYKASGSCGSCDYRGTYNEKKCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDP 710          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   18 LAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            + +KQP+TWYK++F+ P GN+PL L M  MGKG VW+NG +IGRHWP                Y E KC ++C  PSQRWYHVPRSWLKP GNLLV+FEEWGG+P
Sbjct:  612 VVKKQPLTWYKSSFDTPRGNEPLALDMNTMGKGQVWVNGHNIGRHWPAYTARGNCGRCNYAGIYNEKKCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDP 716          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 3
Query:   24 QKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            QKQP+TWYK  FN P G++PL L M +MGKG +WINGQ IGR+WP                Y E KC+T C + SQRWYHVPRSWL P+GNLLV+FEEWGG+P
Sbjct:  608 QKQPLTWYKAFFNAPDGDEPLALDMSSMGKGQIWINGQGIGRYWPGYKASGNCGTCDYRGEYDETKCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDP 710          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.793e-34
Identity = 65/107 (60.75%), Postives = 73/107 (68.22%), Query Frame = 3
Query:   21 AQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP-XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHW 338
            A KQP+ WYKTTF+ P GNDPL L +G+MGKG  WINGQSIGRHW                 TYTE KC + C   SQ+WYHVPRSWL+P GNLLVVFEEWGG+  W
Sbjct:  616 AWKQPLVWYKTTFDAPGGNDPLALDLGSMGKGQAWINGQSIGRHWSNNIAKGSCNDNCNYAGTYTETKCLSDCGKSSQKWYHVPRSWLQPRGNLLVVFEEWGGDTKW 722          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.301e-31
Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = 3
Query:    6 QGASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPH 335
            QG+ +A+KQP+TWYK+TF  P GN+PL L M  MGKG VWING++IGRHWP               T+   KC + C   SQRWYHVPRSWLK S NL+VVFEE GG+P+
Sbjct:  608 QGSFVAKKQPLTWYKSTFATPAGNEPLALDMNTMGKGQVWINGRNIGRHWPAYKAQGSCGRCNYAGTFDAKKCLSNCGEASQRWYHVPRSWLK-SQNLIVVFEELGGDPN 716          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL5_ARATH (Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   27 KQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGE 329
            KQP+TWYK  F+ P GN+PL L + +MGKG  WINGQSIGR+W                TY +NKC++ C  P+QRWYHVPRSWLKP GNLLV+FEE GG+
Sbjct:  621 KQPLTWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQSIGRYW-MAFAKGDCGSCNYAGTYRQNKCQSGCGEPTQRWYHVPRSWLKPKGNLLVLFEELGGD 720          
The following BLAST results are available for this feature:
BLAST of DY257935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL_MALDO7.136e-4163.30Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGAL1_ARATH1.139e-3862.16Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC4.787e-3760.91Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGA12_ARATH1.179e-3557.27Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL_ASPOF2.627e-3561.54Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL2_ARATH3.430e-3558.10Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL2_ORYSJ2.904e-3459.22Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL_DIACA3.793e-3460.75Putative beta-galactosidase OS=Dianthus caryophyll... [more]
BGAL4_ARATH2.301e-3156.36Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]
BGAL5_ARATH9.668e-3057.43Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BG... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257935 ID=DY257935; Name=DY257935; organism=Citrus clementina; type=EST; length=781bp
GGGCACAAGGAGCATCGTTGGCCCAAAAACAACCGATGACGTGGTACAAG
ACTACTTTCAATGTACCGCCAGGCAACGACCCATTACCTTTACACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAGAGTATTGGGCGCC
ACTGGCCTGGATATATAGGAAATGGTAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAACAAATGCCGAACTTACTGCCGAAACCCCTCTCA
ACGATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAGAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
ACGAGAACAACATAAACAGCTACGACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATAGTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAAGGTCATTCACTCAAATAGGCAAAAGTGTTAGT
TCCTCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCAACTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGGGA
AAGTAATAGATAGCAGCTTTTTGATTGCATC
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