DY257937

Overview
NameDY257937
Unique NameDY257937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257937_ssr139 microsatellite DY257937_ssr139:139..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1039 contig Ccv1_Contig1039:1..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257937 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.996e-17
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  171 MARSFSNAKLFSAFVADGISNAVYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 452
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of DY257937 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  171 MARSFSNAKLFSAFVADGISNAVYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 458
            MARS   AKL  A VADGIS ++ +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of DY257937 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.471e-11
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  171 MARSFSNAKLFSAFVADGISNAVYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 458
            MARS S+ KL  A + DG+  ++ +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of DY257937 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 39/100 (39.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query:  171 MARSFSNAKLFSAFVADGISNAVYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 458
            MARS S+ K   A V D +  ++ +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of DY257937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU3.996e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI2.269e-1244.79Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.471e-1139.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI9.533e-1139.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BB04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257937 ID=DY257937; Name=DY257937; organism=Citrus clementina; type=EST; length=752bp
GCGGGGGAACCCATAAACACAAACGCTTTGAGGGGATTTTCGCGCTACGA
AGAGGGAAGTTTCTTTAGCTGCTGTTGAAGGCTTTTCGATAGAAAGAATA
GAAGGAAGTTGCTTTCTGCAGCAGCGTTAAGATCTCTTATCATCATCATC
ATCCCACATAACTAAGAAAAATGGCTCGCTCTTTCTCAAACGCTAAGCTT
TTCTCTGCTTTCGTCGCTGACGGAATCTCTAACGCCGTCTACAAAAGAGG
ATACTCGGCGGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTA
GGAGTGCTGCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCC
AGTGAGAAGGTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCC
GGAGAATCTCGCCAACGAGCTCGATGGGGCCGACCTCAGGGCCATGTTCT
TGAAGCACAACAACTGATCATCAAAATTAATAAGTATTATTATTAATATA
TATTAATTCGGACATGGAAACTGAGGAAGGACGAAAGAAAAATTAAAAAA
AGATTAAAAAGGGATTTGTTCTGATGTGGTCAGCCGCATGAGCTCTCGAG
GAATTCCGGGAAATTGGCGTAGCAGCTGCAGCTCCCCTGTTCTCTCTGTT
TTGACTTGGGGATCCAAACTAGATTTTGTATTGCATGTAACATTCCTGTT
TTTTTGTTGCCATTTTTCGGAAATAAAGATGATTTATTATTTACAATTCT
GG
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