DY257950

Overview
NameDY257950
Unique NameDY257950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1320
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12614 contig Ccv1_Contig12614:531..1850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 6.114e-21
Identity = 76/249 (30.52%), Postives = 115/249 (46.18%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXXXXXXQHQCPQLKAICLKF 757
            ++VRA F+ +L++   +          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L +L E     D    VG + FKAHK ILAARSPVF A F   + +   ++V + DVEP +F+ M++FIYT K P++              M  +LLAAAD Y ++R                           H   QLKA  + F
Sbjct:   96 SEVRAKFKFSLLNAKREET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQSNTNMLKVPECQLSDDLGNLWEGSRFTDCSLFVGGQEFKAHKSILAARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNL------------EKMADNLLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDF 324          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.779e-20
Identity = 78/267 (29.21%), Postives = 124/267 (46.44%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYSI---PVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXXXXXXQHQCPQLKAICLKFAATPANLGVIMQSEGFKH 811
            ++VRA F+ ++++   +          +A+ES       +G  WG+K+F +R  L  E +  + +D L I C V VV + +    Q +I    VP   + + L +L ++E   D+   VG   F+AHK ILAARS VF A F   + +R L++V + DV+  + K ML FIYT K P++              M   LLAAAD Y +++                           H   QLKA  + F  T A    +M++ G+++
Sbjct:  551 SEVRAKFKFSILNAKREET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNL------------EKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHAT--DVMETSGWQN 795          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.323e-20
Identity = 77/249 (30.92%), Postives = 113/249 (45.38%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXXXXXXQHQCPQLKAICLKF 757
            ++VRA F+ +L++   +          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L +L E     D    VG + FKAHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ FIYT K P++              M   LLAAAD Y ++R                           H   QLKA  + F
Sbjct:   96 SEVRAKFKFSLLNAKREET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQSNMNMLKVPECQLSDDLGNLWECSRFTDCSLYVGGQEFKAHKSILAARSPVFNAMFEHEMEESKKNRVDISDVEPEVFKEMMGFIYTGKAPNL------------EKMADSLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAIDF 324          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.760e-20
Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 637
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ FIYT K P++              M   LLAAAD Y ++R
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL------------DKMADDLLAAADKYALER 284          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.760e-20
Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 637
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ FIYT K P++              M   LLAAAD Y ++R
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL------------DKMADDLLAAADKYALER 284          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.760e-20
Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 637
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ FIYT K P++              M   LLAAAD Y ++R
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL------------DKMADDLLAAADKYALER 284          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.760e-20
Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 637
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ FIYT K P++              M   LLAAAD Y ++R
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL------------DKMADDLLAAADKYALER 284          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.828e-20
Identity = 81/285 (28.42%), Postives = 126/285 (44.21%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXXXXXXQHQCPQLKAICLKFAATPANLGVIMQSEGFKHXXXXXXXXXXXXXKTLAS 865
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V +KDVEP +FK M+ FIYT K  ++              M   LLAAAD Y ++R                           H   QLK   + F    A+   +M++ G+K              ++LAS
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNL------------DKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAS--DVMETSGWKSMVVSHPHLVAEAYRSLAS 358          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.828e-20
Identity = 81/285 (28.42%), Postives = 126/285 (44.21%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXXXXXXQHQCPQLKAICLKFAATPANLGVIMQSEGFKHXXXXXXXXXXXXXKTLAS 865
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V +KDVEP +FK M+ FIYT K  ++              M   LLAAAD Y ++R                           H   QLK   + F    A+   +M++ G+K              ++LAS
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLSDELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNL------------DKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAS--DVMETSGWKSMVVSHPHLVAEAYRSLAS 358          
BLAST of DY257950 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.828e-20
Identity = 81/285 (28.42%), Postives = 126/285 (44.21%), Query Frame = 2
Query:   26 TDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXXXXXXQHQCPQLKAICLKFAATPANLGVIMQSEGFKHXXXXXXXXXXXXXKTLAS 865
            ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+    D    V  + F+AHK ILAARSPVF A F   + +   ++V +KDVEP +FK M+ FIYT K  ++              M   LLAAAD Y ++R                           H   QLK   + F    A+   +M++ G+K              ++LAS
Sbjct:   96 SEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNL------------DKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAS--DVMETSGWKSMVVSHPHLVAEAYRSLAS 358          
The following BLAST results are available for this feature:
BLAST of DY257950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SPOLB_DANRE6.114e-2130.52Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]
RDX_DROME1.779e-2029.21Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]
SPOLA_DANRE2.323e-2030.92Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOP_PONAB6.760e-2033.01Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE6.760e-2033.01Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN6.760e-2033.01Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN6.760e-2033.01Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOP_XENTR8.828e-2028.42Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA8.828e-2028.42Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA8.828e-2028.42Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257950 ID=DY257950; Name=DY257950; organism=Citrus clementina; type=EST; length=1320bp
GTTTATTGCGTTGGCGAGTGAAGGAACGGACGTGAGGGCGCTGTTTGAGT
TGACATTGGTTGACCAAAGTGGGAAAGGAAAGCATAAAGTTCATAGTCAT
TTTGATCGAGCGTTAGAGAGTGGCCCGTACACCTTGAAGTATCGTGGAAG
CATGTGGGGCTATAAGCGCTTCTTTAAAAGAACATCTCTGGAGACTTCTG
ATTATATTAAGGATGATTGTCTTCTCATCAACTGCACTGTTGGAGTTGTT
AGAAACCGCCTTGAGGGACCAAAACAGTATTCCATACCAGTGCCACCGTC
AGACATGGGCCAGGGTCTTAAGGATTTGCTAGAGTCTGAAATTGGATGTG
ACATAGTTTTTGAGGTTGGTGATGAAACATTTAAAGCTCATAAACTGATA
CTTGCTGCTCGCTCTCCTGTTTTCAGAGCCCAGTTCTATGGGCTTGTTGG
AGATCGTAACTTGGATAAAGTAGTTGTGAAGGACGTTGAACCCTCAATCT
TCAAGGCAATGCTCCTGTTTATATACACCGATAAATTTCCTGATGTATAT
GAAATTACTGGCACAACATCAATGTGCACAACAACCAACATGGTACAGCA
TCTACTGGCTGCAGCTGATCTTTATAATGTAGATCGATTGAAATTGTTGT
GTGAATCAAAATTATGTGAAGAACTAAATGCTGAGACAGTGGCCACAACA
CTCGCACTGGCAGAGCAACATCAGTGTCCCCAGCTTAAGGCTATCTGCTT
GAAGTTTGCTGCAACTCCGGCGAACTTGGGGGTGATAATGCAGTCAGAAG
GGTTCAAGCACTTGGAGGAGAGCTGCCCATCACTGTTGTCCGAGCTCCTA
AAGACATTGGCTTCAGGTGATGATACCTCAAGTCTGTCATCAAATAGGAA
AAGAAGTGGCAGCAGTATATATGCACTAGATCTAGCTGGGAAATGGGGCA
GCAGCAGAGTCAGCAAATCCCAATGGGCAGGCGTGTAACAAGGCGGGTTT
TAAACCTTTTAATCTCTTCAAAAAAACTACATTGCCTAAAAAGGGTTTGG
AGTTGTTTTGGCGAACACCAGTCCCAAGGTTAAACACTTCCATGTTAAAA
ATTAGGAAAGGGCCTCCTAAAGGGTTGCCGGGGTCCTTTAGGTTTTTTCC
AAAAAAAAGGAAATTTAGTGTTTGCCCTGGTCCCCCTAAAAATTTTTTTA
TTAATAAAAAAAATATTTTTTTTCCCCCCCTGTGCTCCCCCTCGTTTCCC
CCCCCCCCCTCCCCCTCCCCCCCCTTCCTTCCAATATCATCATTTTTTTT
TTGTTAAAAAAAAGTGGGTG
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