DY258108

Overview
NameDY258108
Unique NameDY258108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1391
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1049 contig Ccv1_Contig1049:1..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.451e-33
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  823 GKYILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSPGFYWEPFPPHLGLPVIFPPL 1167
            G Y +P   ++++P + +H +  IWG   + F+ P  F +GV     +  + L F  GPR+C+G +FA  +AK+ L MILQR++ +++PSYVH+P F      P  G  VI+  L
Sbjct:  410 GSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFN-PMRFVDGVANATKNNVTYLPFSWGPRVCLGQNFALLQAKLGLAMILQRFKFDVAPSYVHAP-FTILTVQPQFGSHVIYKKL 522          

HSP 2 Score: 78.9518 bits (193), Expect = 5.451e-33
Identity = 44/134 (32.84%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  444 REVKAMKGESVGYGNDYFGLLLKAYHDPDMTKR-------ISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLG 824
            + +KA+K    G  +D  G+LL++ +  ++ K+       +S++ +I+ECK FY AG E                 +WQE+ REEVL+ FG+  P  + +  LK +SM++ E LRLYPP +++++ V ++ +LG
Sbjct:  279 KRMKALKAGEPGE-DDLLGVLLES-NIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWTTILLSKHPEWQERAREEVLQAFGKNKPEFERLNHLKYVSMILYEVLRLYPPVIDLTKIVHKDTKLG 410          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 1.459e-13
Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 3
Query:  489 DYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP-DGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            D+  +LL A  + D+  ++S   L  E  TF   GH+                 + Q + REEV E+ G Q+    D +GK+  ++M I ES RLYPP   + R + + V
Sbjct:  284 DFLDILLGARDEDDI--KLSDADLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQHRCREEVREILGDQDFFQWDDLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPV 391          

HSP 2 Score: 46.9802 bits (110), Expect = 1.459e-13
Identity = 28/86 (32.56%), Postives = 42/86 (48.84%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPS 1092
            LP    + + I A+H +  +W     +F S R   E   K   H  + + F +GPR C+G  FA +E K+   M L R+  +L PS
Sbjct:  399 LPAGSLISMHIYALHRNSAVWPDPE-VFDSLRFSTENASK--RHPFAFMPFSAGPRNCIGQQFAMSEMKVVTAMCLLRFEFSLDPS 481          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F3_RAT (Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus norvegicus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 4.149e-13
Identity = 35/125 (28.00%), Postives = 60/125 (48.00%), Query Frame = 3
Query:  456 AMKGESVGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            A+K ++     D+  +LL +  +    + +S + +  E  TF   GH+                 ++QE+ R+EV EL   + P     D + +L  ++M I ESLRL+PPA  ISR   +++ L
Sbjct:  286 ALKAKAKAKTLDFIDVLLLSKDEHG--EALSDEDIRAEADTFMFGGHDTTASGLSWILYNLAKHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPATAISRCCTQDIML 408          

HSP 2 Score: 46.2098 bits (108), Expect = 4.149e-13
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLI--FSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P  +   I I   HH+P +W    +   F    D  +G   LA      + F +GPR C+G  FA +E K+AL + L R+RV
Sbjct:  413 VIPKGVICRISIFGTHHNPAVWPDPEVYNPFRFDADNGKGRSPLA-----FIPFSAGPRNCIGQTFAMSEMKVALALTLLRFRV 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 4.153e-13
Identity = 34/119 (28.57%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  489 DYFGLLLKAYH---DPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLE-LFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGEVH 833
            D+  L+++AY+   D D  K +S   +  +   F  AG+E                 D Q+KL+EE+ E L  +  PT D +  ++ + MV+NE+LRLYP    + R  +++V +  ++
Sbjct:  270 DFIYLMMEAYNKSKDKDSHKALSEIEITAQSIIFIFAGYETTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIY 388          

HSP 2 Score: 46.2098 bits (108), Expect = 4.153e-13
Identity = 26/79 (32.91%), Postives = 40/79 (50.63%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            +P    ++IP   +HHDPQ W         P  F++   K +      L F +GPR C+G+ FA    K+AL+ +LQ +
Sbjct:  389 IPKGSTVIIPSYVLHHDPQHWPEPEEF--QPERFSKEN-KGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNF 464          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: THAS_MOUSE (Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 PE=2 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 5.386e-13
Identity = 31/101 (30.69%), Postives = 50/101 (49.50%), Query Frame = 3
Query:  519 HDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGK---LKTMSMVINESLRLYPPAVNISRNVERE 812
            H    +K  ++D ++ +   F IAGHE                 D QE+L +EV +LF  ++P P+       L  + MVI+E+LR+YPPA   +R   ++
Sbjct:  318 HPTSTSKPFTVDEIVGQAFLFLIAGHEVITNTLSFITYLLATHPDCQERLLKEV-DLFMGKHPAPEYHSLQEGLPYLDMVISETLRMYPPAFRFTREAAQD 417          

HSP 2 Score: 46.595 bits (109), Expect = 5.386e-13
Identity = 28/85 (32.94%), Postives = 41/85 (48.24%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSP 1089
            +P    L I + A+HHDP+ W      F   R  AE  L+    T   L F +GPR C+G+       K+ +L +L ++R   SP
Sbjct:  425 IPAGTVLEIAVGALHHDPEHWPNPET-FDPERFTAEARLQRRPFT--YLPFGAGPRSCLGVRLGLLVVKLTILQVLHKFRFEASP 506          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F4_RAT (Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.180e-12
Identity = 36/131 (27.48%), Postives = 59/131 (45.04%), Query Frame = 3
Query:  438 STREVKAMKGESVGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            S  E   +K ++     D+  +LL    +    K +S + +  E  TF   GH+                 ++QE+ R+EV EL   +  T    D + +L  ++M I ESLRL+PP   ISR   +++ L
Sbjct:  280 SQHEDDILKAKARSKTLDFIDVLLLTKDEDG--KELSDEDIRAEADTFMFEGHDTTASGLSWILYNLARHPEYQERCRQEVRELLRDRESTEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRRCTQDIVL 408          

HSP 2 Score: 46.2098 bits (108), Expect = 1.180e-12
Identity = 28/82 (34.15%), Postives = 43/82 (52.44%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P  +  +I I A HH+P +W    +    P  F    +K  +  + I  F +GPR C+G  FA  E K+AL + L R+RV
Sbjct:  413 VIPKGVICIINIFATHHNPTVWPDPEVY--DPFRFDPENIKDRSPLAFI-PFSAGPRNCIGQTFAMNEMKVALALTLLRFRV 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F1_RAT (Cytochrome P450 4F1 OS=Rattus norvegicus GN=Cyp4f1 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.533e-12
Identity = 30/98 (30.61%), Postives = 48/98 (48.98%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K +S + +  E  TF   GH+                 ++QE+ R+EV EL   ++P     D + +L  ++M I ESLRL+PP   ISR   +++ L
Sbjct:  311 KELSDEDIRAEADTFMFEGHDTTASGLSWILYNLANDPEYQERCRQEVQELLRDRDPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILL 408          

HSP 2 Score: 45.8246 bits (107), Expect = 1.533e-12
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            +P  +  +I I  IHH+P +W    +   +P  F    +K ++  + I  F +GPR C+G  FA +E K+AL + L R+R+
Sbjct:  414 IPKGIICLISIFGIHHNPSVWPDPEVY--NPFRFDPENIKDSSPLAFI-PFSAGPRNCIGQTFAMSEMKVALALTLLRFRL 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: THAS_PIG (Thromboxane-A synthase OS=Sus scrofa GN=TBXAS1 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.989e-12
Identity = 29/97 (29.90%), Postives = 51/97 (52.58%), Query Frame = 3
Query:  531 MTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGK---LKTMSMVINESLRLYPPAVNISRNVERE 812
            ++K +++D ++ +   F IAG+E                 D QEKL  EV + F +++P+P+       L  + MV++E+LR+YPPA   +R   R+
Sbjct:  323 LSKPLTVDEVVGQAFLFLIAGYEIITNTLSFVTYLLATNPDCQEKLLREVDD-FSKKHPSPEHCSLQQGLPYLDMVLSETLRMYPPAFRFTREAARD 418          

HSP 2 Score: 45.4394 bits (106), Expect = 1.989e-12
Identity = 26/85 (30.59%), Postives = 40/85 (47.06%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSP 1089
            +P    L + + A+HHDP+ W         P  F     +L     + L F +GPR C+G+     E K+ LL IL+++R    P
Sbjct:  426 IPAGTVLEVAVGALHHDPKHWPHPETF--DPERFTAEAQRLQ-QPFTYLPFGAGPRSCLGVQLGLLEIKLTLLHILRKFRFEACP 507          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F3_MOUSE (Leukotriene-B(4) omega-hydroxylase 2 OS=Mus musculus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.990e-12
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K +S + +  E  TF   GH+                 ++QE+ R+EV EL   + P     D + +L  ++M I ESLRL+PP   ISR   +++ L
Sbjct:  311 KALSDEDIRAEADTFMFGGHDTTASGLSWILYNLARHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTAISRCCTQDIVL 408          

HSP 2 Score: 45.8246 bits (107), Expect = 1.990e-12
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLI--FSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P  +   I I   HH+P +W    +   F    D  +G   LA      + F +GPR C+G  FA +E K+AL + L R+RV
Sbjct:  413 VIPKGVISRISIFGTHHNPAVWPDPEVYDPFRFDADNVKGRSPLA-----FIPFSAGPRNCIGQTFAMSEMKVALALTLLRFRV 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.992e-12
Identity = 29/86 (33.72%), Postives = 43/86 (50.00%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPS 1092
            LP  + L + I  +HH+PQ+W         P  FA G    A H+ + + F  G R C+G  FA  E K+A+ + L R+ +   PS
Sbjct:  399 LPAGITLSLSIYGLHHNPQVWPNPEEF--DPSRFAPGS---ARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPS 479          

HSP 2 Score: 41.9726 bits (97), Expect = 1.992e-12
Identity = 24/84 (28.57%), Postives = 38/84 (45.24%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNP-TPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 + Q++ REE+  L G     T D + ++   +M I E+LRLYPP   +SR + + +
Sbjct:  308 EVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPI 391          
The following BLAST results are available for this feature:
BLAST of DY258108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
C72A1_CATRO5.451e-3336.52Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4B1_HUMAN1.459e-1330.91Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]
CP4F3_RAT4.149e-1328.00Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus nor... [more]
CP3AG_MOUSE4.153e-1328.57Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
THAS_MOUSE5.386e-1330.69Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 P... [more]
CP4F4_RAT1.180e-1227.48Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4... [more]
CP4F1_RAT1.533e-1230.61Cytochrome P450 4F1 OS=Rattus norvegicus GN=Cyp4f1... [more]
THAS_PIG1.989e-1229.90Thromboxane-A synthase OS=Sus scrofa GN=TBXAS1 PE=... [more]
CP4F3_MOUSE1.990e-1230.61Leukotriene-B(4) omega-hydroxylase 2 OS=Mus muscul... [more]
CP4AO_PIG1.992e-1233.72Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258108 ID=DY258108; Name=DY258108; organism=Citrus clementina; type=EST; length=1391bp
CACTCTCGTTAACCCGCTATTTGTGTTTGGTACCCGGGTATTCGGCCATT
CCGGCCGGGTGTCAACGAAAACTTCGCCCCCCTCGCTTTTTCATGCATAA
AGCTTTCATGTTATCGATTCCTATCGAAGGTTCGCAAGAGCGGGTGTTTC
TTGTTAAAAAGTTCGGTGTAACAACGAGGGCAAGGGTGTACCGTGGTCTG
TCCAAGTTCTTCACGTTTCTAACATTCGGTAATTTTTTCCCAGTGACAGT
TTTTCGGTAGCAGTTATTCGGTAGAGGGTAAGCATATTCAATAAGCTTTC
CAATATGTCTCTCATCGCCTCCAGAAATGCCTATAAGTTTAAAATCTCTC
TTATTGGAGTTTTTGTGAAAACATCTGATGATGTTGAAGCGGACAAACTC
GAACAGGGGATTCGAGTTTCAATCATAAAAATGATGAAGTACACGAGAAG
TGAAGGCGATGAAGGGAGAATCAGTAGGATATGGAAATGATTATTTTGGA
TTGCTCCTGAAGGCTTATCACGATCCTGATATGACCAAGAGAATCTCTCT
TGATGTACTAATTGATGAGTGCAAGACATTCTATATTGCAGGACATGAAA
CAACCACAAAATTACTTACCTGGACAATTTTACTTCTAGCAACGCACACA
GATTGGCAAGAGAAATTAAGAGAGGAAGTGCTTGAATTATTTGGCCAGCA
AAATCCGACACCAGATGGCATAGGAAAATTGAAAACAATGAGCATGGTTA
TAAATGAATCTTTAAGGCTGTATCCGCCAGCTGTTAACATTTCGAGGAAT
GTTGAAAGGGAAGTGAGACTGGGGGAAGTACATTCTTCCAGNCAATATGG
AACTTGTTATTCCAATTCTGGCAATTCACCATGACCCTCAAATTTGGGGG
AGAAAGATGTTGATATTTTCAAGCCCGAGAGATTTTGCAGAAGGTGTGCT
AAAGCTAGCAACACACACCAGCAGCATTCTTTCTTTTTAGTCAGGGCCAA
GAATTTGTGTGGGGCTTGATTTTGCAGCTACAGAAGCAAAGATTGCGCTT
CTCATGATTCTGCAACGATACAGGGTCAATCTGTCCCCCAGTTATGTGCA
CTCCCCGGGTTTTTATTGGGAACCCTTCCCCCCTCACCTGGGACTTCCAG
TTATATTTCCCCCCCTTTAATGGCTCACCCAAAAAAACTAGCTAAAGAAA
CTTTTCTCCTTTTTATAACCCCTCCCCGGGGGTTTGCGGGAATCCCCACC
CCCCTTTTTTTTTATAAAAAAAAAAAAATTTTTTTTCGTTTTTTTTTTTT
TTTTTTTTTTAAAAACCCCCCCTCTCCCGTGGGGGGCACGTGGAGGAGAC
AAACAAAAACCCACCCTATTTTCTTTGTTCCCCCTCAACAA
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