DY258202

Overview
NameDY258202
Unique NameDY258202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258202_ssr82 microsatellite DY258202_ssr82:82..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 1.491e-103
Identity = 189/216 (87.50%), Postives = 205/216 (94.91%), Query Frame = 2
Query:  176 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 805
            G YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF++NEF+LESKSTIGVEFATRSIRVDDK+VKAQIWDTAGQER      AYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVSTEDA++FAE+ENTFFMETSALESLNVENAFTEVLT+IY+VV RKAL+VGDDPAALPKGQTIN+G KDDVSAVKK GCCS+
Sbjct:    3 GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 1.601e-89
Identity = 169/214 (78.97%), Postives = 190/214 (88.79%), Query Frame = 2
Query:  182 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 802
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS++VD KVVKAQIWDTAGQER      AYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV T++ ++FAE+E+ +FMETSALES NVENAF EVLTQIYR+VS+++++ GDD  + P KG+ INI  KDDVSAVKK GCCS
Sbjct:    5 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCS 216          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 2.311e-88
Identity = 169/217 (77.88%), Postives = 187/217 (86.18%), Query Frame = 2
Query:  173 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 802
            M  YRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS+ VDDKV+KAQIWDTAGQER      AYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV TEDA+SFAEKE+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA++   + A +P KG  I+IG   DVSAVKK GCCS
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 8.783e-88
Identity = 164/220 (74.55%), Postives = 191/220 (86.82%), Query Frame = 2
Query:  173 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALPKGQTINIGTKDDVSAVKKTGCCSA 805
            M  YRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+S+ +D+KV+KAQIWDTAGQER      AYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVST++A+  AE+E  +FMETSALE+ NVENAFTE LTQIYR+VS+KA++ GD+ A   A PKG+TINI  KD+ S+ KK GCCS+
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 4.819e-86
Identity = 163/219 (74.43%), Postives = 187/219 (85.39%), Query Frame = 2
Query:  173 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD--DPAALP-KGQTINIGTKDDVSAVKKTGCCS 802
            MG YR DD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+++ VD KVVKAQIWDTAGQER      AYYRGAVGALLVYDVTR  TFEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV TED +SFAE+E+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A++ GD    + LP KGQTIN+  K+D S +K+ GCCS
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINV--KEDSSVLKRFGCCS 217          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 4.080e-85
Identity = 160/217 (73.73%), Postives = 187/217 (86.18%), Query Frame = 2
Query:  173 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-PAALPKGQTINIGTKDDVSAVKKTGCCS 802
            M  YR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+++VD KVVKAQIWDTAGQER      AYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV TED +S+AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K ++ G+D  A++PKG+ I +  K+DVSA+KK GCCS
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCS 215          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 2.239e-83
Identity = 154/217 (70.97%), Postives = 187/217 (86.18%), Query Frame = 2
Query:  173 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 802
            M  YRAD++YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT++ +V+ KVVKAQIWDTAGQER      AYYRGAVGALL+YDVTRH TFEN  RWL+ELR HTD NIV+ML+GNK DLRHL AV TE+A++FAE+E+ +FMETSAL++ NVENAFTEVLTQI+++VS++++D G + A LP KG+TIN+  K+D S +K+ GCCS
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 7.201e-82
Identity = 153/219 (69.86%), Postives = 182/219 (83.11%), Query Frame = 2
Query:  173 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAAL---PKGQTINIGTKDDVSAVKKTGCCS 802
            M  Y+ADD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+S+ +D KV+KAQIWDTAGQER      AYYRGAVGALLVYDVTR  TFE   RWLKELRDHTD NIV+ML+GNK+DLRHL  VSTED ++FAEKE+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A++ GD P+      +GQTIN+   +D S + +  CCS
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINV--NEDSSVLNRYRCCS 217          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 9.733e-79
Identity = 152/215 (70.70%), Postives = 174/215 (80.93%), Query Frame = 2
Query:  179 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQ-TINIGTKDDVSAVKKTGCCS 802
            +++ DDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSI+VD K +KAQIWDTAGQER      AYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V TE AQ+F E+E   F+ETSALES NVE AF ++LT+IY +VS+K LD  D+   + +G+  I I    D    KK GCCS
Sbjct:    2 SHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of DY258202 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.718e-75
Identity = 145/217 (66.82%), Postives = 177/217 (81.57%), Query Frame = 2
Query:  179 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 805
            A R D++YDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+++V+ + VKAQIWDTAGQER      AYYRGA+GALLVYDVT+  TFENV RWLKELRDH DSNIVIML+GNK DL+HLRAV+TEDAQS+AEKE   F+ETSALE+LNVE AF  +L+++YR++S+K++  D     A + +GQTI++    + +A  K  CCS+
Sbjct:    2 ARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNA--KKPCCSS 216          
The following BLAST results are available for this feature:
BLAST of DY258202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_TOBAC1.491e-10387.50Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ1.601e-8978.97Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH2.311e-8877.88Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_NICPL8.783e-8874.55Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA4.819e-8674.43Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH4.080e-8573.73Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH2.239e-8370.97Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11E_LOTJA7.201e-8269.86Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE9.733e-7970.70Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAA2A_ARATH1.718e-7566.82Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CC09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258202 ID=DY258202; Name=DY258202; organism=Citrus clementina; type=EST; length=1206bp
GATAGCGAAAGCGTTAGATTTTCTTGATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTCTCTAT
TGCGTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAG
AAGAAGAGAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACT
ACGATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAA
TCAAATCTGTTATCTCGATTCACTAAGAACGAATTCAGCCTCGAATCGAA
ATCCACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACA
AGGTCGTCAAGGCTCAAATTTGGGACACCGCCGGCCAAGAACGTGCGTAC
TACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGACATGT
TACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCACACAG
ACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCAC
TTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGAA
CACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATG
CCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGGAAGGCT
CTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAA
TATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGATGCTGCT
CTGCATAATCTGCAGCTTCGAAGGAAATCCAGGTGGTAAAAATAGTTTCT
CCTCTTTCTAGAACTTACATTTTCATGGCTTGGAGACATCTTGGCTTTGA
TCTGCTTGCCAAGACCAGACAACATGGAGTGCGGGAAGAAATATAGTTTT
ACATTTCATCATGTTACGGTAATCTCAAAATCTTGCTTTGAGTAAGTTTA
AGCCCTAATCATTTGGATCTGAAATCTCATGTTTGTGCAAGAACCTACTG
TTTTCCTCTTATTGGATTGTTCCCTGTTTGCCCCCAAAAATATTGGAAAT
AGGTTATCCCCCTCTAACCTCTTAGGGAAATTTTTAAATTTGGGTTTCGG
AAGGACGGAGATTTTGGGAAAATTTGTTTAAAAAAATATTTTTTTTTTTT
AAACCC
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