DY258252

Overview
NameDY258252
Unique NameDY258252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10106 contig Ccv1_Contig10106:4..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 3.239e-73
Identity = 125/161 (77.64%), Postives = 137/161 (85.09%), Query Frame = 3
Query:  198 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 680
            M+ SS+ +RKALSKIACNRLQKEL+EWQVNPP+GFKH+ TDNLQ+WVIEV GAPGTLYANETY LQVEFP+ YPMEAPQVIF+ P+PLHPH+YSNGHICLDILYDSWSPAMTV                KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:    1 MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 3.239e-73
Identity = 125/161 (77.64%), Postives = 135/161 (83.85%), Query Frame = 3
Query:  198 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 680
            MS S   +RK LSKIA NRLQKEL EWQ+NPP+GFKHK TDNLQRW+IEV GAPGTLYAN+TYQLQV+FPE YPME+PQVIFLHP+PLHPH+YSNGHICLDILYDSWSPAMTV              T KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:    1 MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 2.100e-72
Identity = 122/161 (75.78%), Postives = 135/161 (83.85%), Query Frame = 3
Query:  198 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 680
            M+ SS  +RKALSKIACNRLQKEL+EWQ+NPP+GF+HK TDNLQ+W I+V GAPGTLYANETYQLQVEFPE YPMEAPQV+F+ P+P HPH+YSNGHICLDILYDSWSPAMTV                KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:    1 MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.408e-68
Identity = 116/161 (72.05%), Postives = 133/161 (82.61%), Query Frame = 3
Query:  198 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 680
            M+ SS +TRK L+KIA NRLQKE  EWQ NPPSGFKH+ +DNLQRW+IEV+G PGTLYANETYQLQVEFPE YPMEAPQVIF HP+PLHPH+YSNGHICLD+LYDSWSPAM +              +VKQ+P+DND Y+KNC++GRSPKETRW FHDDKV
Sbjct:    1 MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.572e-35
Identity = 70/143 (48.95%), Postives = 91/143 (63.64%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 680
            RLQKEL + + NPP        DNL +WVI V+G  G++Y  E ++LQ +F   YP+++P+VIF+   P+HPH+YSNGHICL ILYD+WSPA+TV              T K RP D+ +YV    N +SPKE RW FHDD V
Sbjct:    8 RLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLSGCTEKIRPTDDSKYVSRVLN-KSPKEVRWMFHDDTV 149          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.626e-32
Identity = 65/145 (44.83%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGF---KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPS-PLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDD 674
            RLQKEL   Q +PP G    +    +++ +W++++ GAPGTLY  E +QL  +F  RYP ++PQV+F   + P+HPHVYSNGHICL IL + WSPA++V                K+RP DN  YV+ C   ++PK+T+WW+HDD
Sbjct:    7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTC--NKNPKKTKWWYHDD 149          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.124e-32
Identity = 65/145 (44.83%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGF---KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPS-PLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDD 674
            RLQKEL   Q +PP G    +    +++ +W++++ GAPGTLY  E +QL  +F  RYP ++PQV+F   + P+HPHVYSNGHICL IL + WSPA++V                K+RP DN  YV+ C   ++PK+T+WW+HDD
Sbjct:    7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTC--NKNPKKTKWWYHDD 149          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.377e-31
Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGF---KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPS-PLHPHVYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDD 674
            RLQKEL   Q +PP+G    +    + +  W I++ GA GT+Y  E +QL  +F  RYP E+PQV+F   + P+HPHVYSNGHICL IL + WSPA++V                K+RP DN  YVK C   ++PK+T+WW+HDD
Sbjct:    7 RLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVKTC--NKNPKKTKWWYHDD 149          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.529e-14
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  183 SRETSMSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFK-HKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWS 521
            S   S  G  + T  A   +   RLQ+EL    ++   G      +DNL +W+  ++GA GT+Y +  Y+L +EFP  YP  AP V F+ P   HP+V S+G+ICLDIL D WS
Sbjct:   12 SSVASRKGQESGTSAARGSVG-KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPC-FHPNVDSHGNICLDILKDKWS 123          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.811e-14
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGFK-HKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWS 521
            RLQ+EL    ++   G      +DNL +WV  ++GA GT+Y +  Y+L +EFP  YP  AP V FL P   HP+V + G+ICLDIL D WS
Sbjct:   34 RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWS 123          
The following BLAST results are available for this feature:
BLAST of DY258252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UBC18_ARATH3.239e-7377.64Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC16_ARATH3.239e-7377.64Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC15_ARATH2.100e-7275.78Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC17_ARATH1.408e-6872.05Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2W_DICDI1.572e-3548.95Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBE2W_MOUSE1.626e-3244.83Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN2.124e-3244.83Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBE2W_DANRE1.377e-3145.52Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBE2C_XENLA1.529e-1440.35Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MACFA5.811e-1446.15Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258252 ID=DY258252; Name=DY258252; organism=Citrus clementina; type=EST; length=1124bp
GGAGATATGGCTTTGGGGAACGCATGAAGCATTAGAGTGAAGGCGGATTG
GGAGTTTTGTTTGTCGTTTTTTTCTCTTTCTTCTTCGTCAAACCCGAACC
CGAACCCGAACCCGTTGATTTCAATTCAGCAAAACTACAAACTTGATCTA
CCATTCATCTCTGCTCGAATATCGATTTTCAATCTCGAGAAACAAGCATG
TCTGGCTCGTCCACCACCACTCGCAAGGCTCTGAGTAAGATTGCTTGCAA
TCGCCTTCAGAAAGAGCTTGCGGAGTGGCAGGTCAACCCACCTTCTGGTT
TCAAACATAAGGCCACCGATAATCTCCAAAGGTGGGTTATTGAAGTAAAT
GGAGCTCCAGGGACCCTCTACGCTAATGAAACCTACCAACTTCAGGTTGA
GTTTCCCGAACGTTACCCCATGGAGGCCCCTCAGGTCATTTTTCTTCATC
CCTCTCCTCTTCATCCTCACGTTTACAGCAATGGTCATATTTGCTTAGAT
ATCCTGTACGATTCATGGTCCCCAGCAATGACCGTTAGTTCCATTTGTAT
CAGTATTCTCTCCATGCTATCAAGCTCCACTGTAAAGCAACGTCCTGAAG
ATAACGACCGCTATGTGAAGAACTGCAGAAATGGCCGATCTCCTAAGGAG
ACTAGGTGGTGGTTCCATGATGATAAAGTGTAATAAGCAAATTATCCTTT
CTCATCAATCAGTTTAAATAATTAGTGTAGGTGGCTTCCTATTTTAAAGG
AAATGAAAGCAGAAGAGTAAAAGTCTAAAGAAGCATTCTGTAAATGTTTT
TTGGGCTCTTTGCTTAAATAACTCCTGTAAATGGCAATGCCTGGTATCTG
CAAAGAGTTACTTCTCTGTTTTTAGCGGTGTGGGAGGATCAAACTTCATC
ACGTCTTTGTGATAAACCCCCGGCGAGATGTACTTGGGACCTTGGGAGAT
TGAATTTGAAATCCTCCCGGAATATTCTTAAAAATCTGGAAAGTGGCGGT
CCGGAGATTTCCCAGGGAAAACCTTTGCTCCAAACCAACCAAAAAAGTTA
CTTTTTTTATTTTTAATTTTTTCTTTTTCCCAAAAGTCCCAAGGGTTTAA
AAAAACCTTTTTGGGTTGGCTTTA
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