DY258300

Overview
NameDY258300
Unique NameDY258300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1284
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258300_ssr45 microsatellite DY258300_ssr45:45..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1074 contig Ccv1_Contig1074:1..1284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258300 vs. ExPASy Swiss-Prot
Match: Y3684_ARATH (Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.436e-51
Identity = 106/196 (54.08%), Postives = 134/196 (68.37%), Query Frame = 2 
Query:  263 KNSSELEADTKQRIKLEKYSSESEEQEGNSRKWLKDYFDEAKDMIKSDGGPPRWFSPLECGSHNRNSRSPLLLFLPGIDGVGLGLIRQHQRLGEIFDVWCLHIPVTDRTSFTGLLKLIERTIRSENCRSSNRPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAELMSGPMTLTLSYF 850
            KN+ E  A   + +  E   S+ E    + +K L D+ +EA++ +   GGPPRWFSPLECG+   NS  PLLL+LPGIDG GLGLIR H++LGEIFD+WCLHIPV+DRT    L+KLIE T++SEN R  NRP+YLVGES+GACLAL VAARNP++DL LIL NPAT     ++Q +  +   L  G  TL    F
Sbjct:   56 KNNDENRATVAKVV--ENPYSKVEAARPDLQKRLSDFLEEAREFVGDGGGPPRWFSPLECGAQATNS--PLLLYLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPVKDLVKLIEETVKSENFRLPNRPIYLVGESIGACLALDVAARNPNIDLSLILVNPATHVNNFMVQPLSGMLNVLPDGLPTLLEDIF 247
[Close]
BLAST of DY258300 vs. ExPASy Swiss-Prot
Match: Y1457_ARATH (Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.292e-49
Identity = 99/201 (49.25%), Postives = 136/201 (67.66%), Query Frame = 2 
Query:  260 EKNSSELEADTKQRIKLEKYSSESEEQEGNSRKWLKDYFDEAKDMIKSDGGPPRWFSPLECGSHNRNSRSPLLLFLPGIDGVGLGLIRQHQRLGEIFDVWCLHIPVTDRTSFTGLLKLIERTIRSENCRSSNRPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAELMSGPMTLTLSYFVSLM 862
            +K ++E+    K + K+     E    +G   K +KDYF  AK+++K+DGGPPRWFSP++CG    ++  P LLFLPG+DG G+GL+  H+ LG+ F V CLHIPV DRT F GLLK++E  +R E     N+P+YLVG+S G CLALAVAARN  +DLVLIL NPATSF +S LQ ++PI  E++   +  T+ Y +S +
Sbjct:   58 QKGANEVNGKGKSKRKIVSDEIELLWDDGYGSKSVKDYFAAAKEILKADGGPPRWFSPVDCGRPVEDA--PTLLFLPGMDGTGMGLVPHHKALGKAFHVSCLHIPVLDRTPFEGLLKVVEDVLRQEQATRPNKPIYLVGDSFGGCLALAVAARNRSLDLVLILVNPATSFDRSPLQPLLPI-LEMVPEELHFTVPYALSFI 255
The following BLAST results are available for this feature:
BLAST of DY258300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3684_ARATH1.436e-5154.08Acyltransferase-like protein At3g26840, chloroplas... [more]
Y1457_ARATH2.292e-4949.25Acyltransferase-like protein At1g54570, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AD04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258300 ID=DY258300; Name=DY258300; organism=Citrus clementina; type=EST; length=1284bp
CAATAATTTCACGAGAGCGCTGAGCGCCGCAGGGCAAAACGAATAGAGAG
AGAGTAGTTGTAGTTAGTTCTCCATGACGACGGCCGTTGGAGCTTGTGTA
TTCTCAGCCGATTCATCGCTGGCGTTCCGGTGGGACATGACGCCGTCATC
GTCCGGGAAAGCAAAACGAAATCCGATGTCAAAGCGACTGGCGGTGCCCA
CAGCAACAGCAACGACACGGAAAATCGAAACGACGTCGAAGACGATGAGG
AGCTTTGTGGAGAAGAATAGTAGCGAACTAGAAGCTGACACGAAACAGAG
AATTAAATTGGAAAAATATTCGTCGGAGTCTGAAGAACAAGAAGGTAACA
GCAGGAAGTGGTTGAAAGATTATTTTGATGAAGCAAAAGATATGATCAAA
TCGGACGGTGGACCGCCTCGGTGGTTCTCCCCCTTAGAGTGTGGGTCCCA
CAACCGTAATTCTCGTTCTCCTCTCCTCCTCTTTTTACCTGGGATTGATG
GTGTTGGTCTTGGACTAATAAGGCAGCATCAAAGACTTGGAGAGATATTT
GATGTATGGTGCTTGCATATTCCAGTTACAGATCGGACATCATTTACAGG
TCTACTGAAGCTGATTGAAAGAACTATAAGGTCAGAGAATTGCCGTTCAT
CAAATAGACCTGTCTATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCA
CTAGCTGTTGCAGCCCGTAATCCTGATATGGATCTTGTGCTAATTCTGGC
TAACCCAGCTACATCTTTTCGGAAGTCATTGTTGCAAACCATAATGCCTA
TACCGGCGGAGCTCATGTCAGGCCCAATGACTCTTACCCTGTCTTATTTT
GTGAGCTTAATGACAGTGGAAGGGATCAGTTACTGCCAAGTGAGGAGGAA
GGTGACAGACTTTGGCCTGCTCCACCCAACTGCCCAACTCGTTAGGTTGG
GTGGCCGAAGGTCTTTTTCTGTTTTTGGGAAAAGGGGGTTTGATTTGGTA
ACCCCAATCCAGGGGGGCTGGTTACCTACCCCCGGGGAAAAAAAAGTTTG
ACTATTTTTCCCAATTTCCACCCCCCCACCTACTTTCCAAAGGGGAATAA
AGTAAATGAAAAAAAAACAAAGGGGGGGGGGTTGAATTTTTTCCACCCTC
TGTGGGAGCCCCTTTCACCCTTTTTCCCGGGAGGGGGGAAAAAAATGGGG
GGGGGGGGGGCCTCCTCCTCGTGGAAAAAACCCCCCCCTCTTAGGGAGGG
AAACCCCCCCTCCTCTTTGTGTTATTTTTTTTTT
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