DY258317

Overview
NameDY258317
Unique NameDY258317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1296
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258317_ssr1226 microsatellite DY258317_ssr1226:1226..1237. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1081 contig Ccv1_Contig1081:1..1296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.323e-44
Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query:   37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417
            MK  +V+P G+FKKHWQNYVKTWFNQP RK        +  VKIFPRPTAGPLRPVVHG+TLKYNMK   G+GFTLEELKAAGIPKKLAPTIGIS+DH+RKNRSLEG  SNV  ++    ++  FP+
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPR 127          

HSP 2 Score: 67.3958 bits (163), Expect = 1.452e-13
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 2
Query:  374 QRLKTYQAKLVGFPRRARRIRAGDSAHEELATPTPGPGPYMTITLEKPTAHLDKATQDRNSFQA 565
            QRLKTY+AKLV FPRRAR+++AGDS  EELA  T   G YM I  EK    L K T +  S  A
Sbjct:  113 QRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNA 176          

HSP 3 Score: 27.7202 bits (60), Expect = 1.452e-13
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  567 YEQLRIDRANDRHFGARLSNA 629
            Y+++R++R N RH GAR   A
Sbjct:  177 YDKIRLERTNKRHAGARAKRA 197          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.947e-44
Identity = 86/127 (67.72%), Postives = 100/127 (78.74%), Query Frame = 1
Query:   37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417
            MK  +V+P G+FKKHWQNYVKTWFNQP RK        +  VKIFPRPTAGPLRPVVHG+TLKYNMK   G+GFTLEELK+AGIPKKLAPTIGI+VDH+RKNRSLEG  SNV  ++    ++  FP+
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPR 127          

HSP 2 Score: 67.3958 bits (163), Expect = 3.184e-13
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  374 QRLKTYQAKLVGFPRRARRIRAGDSAHEELATPTPGPGPYMTITLEKPTAHLDKATQDRNSFQA 565
            QRLKTY+AKLV FPRRAR+++AGDS  EELA  T   G YM I  EK    L K T +  S +A
Sbjct:  113 QRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKA 176          

HSP 3 Score: 26.5646 bits (57), Expect = 3.184e-13
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  561 RPYEQLRIDRANDRHFGARLSNA 629
            + ++++R++R N RH GAR   A
Sbjct:  175 KAFDKIRLERTNKRHAGARAKRA 197          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.849e-44
Identity = 86/131 (65.65%), Postives = 101/131 (77.10%), Query Frame = 1
Query:   37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429
            MK  +V+P+ +F+KHWQNYVKTWFNQP RK        +  VKIFPRPT+GPLRPVVHG+TLKYNMK  AG+GFTLEELK AGIPKKLAPTIGISVDH+RKNRSLEG  SNV  ++    ++  FP+   Q
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQ 131          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.120e-43
Identity = 85/127 (66.93%), Postives = 100/127 (78.74%), Query Frame = 1
Query:   37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417
            MK  +V+P G+FKKHWQNYVKTWFNQP RK        +  VKIFPRPT+GPLRPVVHG+TLKYNMK   G+GFTLEELKAAGIPKKLAPTIGI+VDH+RKNRSLEG  +NV  ++    ++  FP+
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPR 127          

HSP 2 Score: 73.1738 bits (178), Expect = 1.301e-15
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  350 LRVLHLMCQRLKTYQAKLVGFPRRARRIRAGDSAHEELATPTPGPGPYMTITLEKPTAHLDKATQDRNSFQA 565
            L  L    QRLKTY+ KLV FPRRAR+++AGDS  EELA  T   G Y+ I  EKPT  L K T +  SF+A
Sbjct:  105 LEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKA 176          

HSP 3 Score: 28.8758 bits (63), Expect = 1.301e-15
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  558 FRPYEQLRIDRANDRHFGARLSNA 629
            F+ ++++R++R N RH GAR   A
Sbjct:  174 FKAFDKIRLERTNKRHAGARAKRA 197          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.258e-43
Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   64 GYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429
            G+FKKHWQNYVKTWFNQP RK        +  VKI PRPTAG LRP+VHG+TLKYNMK  +GRGF+LEELKAAGIPKKLAPTIGI+VDH+R+NRSLEG  +NV  +EDL GQ+  FP+  S+
Sbjct:    6 GHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASR 127          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.186e-39
Identity = 81/127 (63.78%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417
            MK  +V+P G+FKK W+NYVKT FNQP  K           VKIFPRPTAGP+RPVVH +TL YNMK  AG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG  +NV  ++    ++  FP+
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPR 127          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.880e-31
Identity = 66/122 (54.10%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   52 VLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417
            +LP G+F K WQ +VKTWFNQP RK    +   E     FPRP AG L+P+V  +T+KYN K   GRGFTLEELK AGIP K APT+GI+VDH+RKNRSLE   +NV  ++     +  FP+
Sbjct:    7 MLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPR 128          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.771e-26
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   55 LPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429
            LP  +F K WQ YVKTWFNQP RK            KI PRP    +RP V   T++YNMK  AGRGFTLEELKAAG+ +++A TIGI VDH+R+NRS E    NV  ++     +  FP+   Q
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQ 132          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 3.619e-26
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   67 YFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429
            +F K WQ  V+TWFNQP RK            +I PRP +GPLRPVV   T++Y+ K  AGRGFTLEELKAAGI KK+A TIGISVD +R+NRS E   +NV  +++   ++  FP+  ++
Sbjct:   13 HFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAK 133          
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.174e-26
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   52 VLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFP 414
            VL   +F+K WQ  VKTWFNQP RK            +I PRP +GPLRP+V+  T +YNMK  +GRGF+L+E++AAG+  K A TIGI+VDH+R+N S+EG   NV+ ++    ++  FP
Sbjct:    7 VLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFP 127          
The following BLAST results are available for this feature:
BLAST of DY258317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL132_BRANA1.323e-4468.5060S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA2.947e-4467.7260S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH3.849e-4465.6560S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL131_ARATH1.120e-4366.9360S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL13_TOBAC3.258e-4368.8560S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL132_ARATH2.186e-3963.78Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_CHLSW4.880e-3154.1060S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_SCHPO2.771e-2649.6060S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_DANRE3.619e-2650.4160S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_SCHMA6.174e-2647.9360S ribosomal protein L13 OS=Schistosoma mansoni G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AF09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258317 ID=DY258317; Name=DY258317; organism=Citrus clementina; type=EST; length=1296bp
TGATATTGTCGTCTGCTTTTCGCTCTGAATACAAAAATGAAGCTCCGACA
TGTACTTCCTGCTGGGTACTTTAAAAAGCATTGGCAGAACTATGTCAAGA
CTTGGTTTAACCAACCGGATCGCAAAAATCCGACGACGAGTTGCTCGACA
GAGAACGTCGTTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCCC
CGTCGTTCATGGCAAGACTTTGAAATATAACATGAAATGAACGGCTGGCA
GAGGCTTTACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTG
GCTCCAACAATTGGCATTTCCGTCGATCATCAACGCAAGAACCGTTCTCT
TGAGGGTCCTCCATCTAATGTGTCAGAGGTTGAAGACTTACCAGGCCAAG
TTGGTTGGTTTCCCAAGACGTGCTCGCAGGATTAGGGCTGGCGATTCTGC
TCATGAGGAATTGGCCACACCCACTCCAGGACCGGGACCTTACATGACCA
TTACTCTTGAGAAGCCTACTGCCCACCTTGATAAGGCCACTCAAGATAGA
AACTCCTTTCAGGCCTTATGAACAGCTCCGGATTGACCGTGCGAACGACC
GCCATTTTGGTGCCCGGTTGAGTAACGCTCGCATAAGCTGAAAAGGAAGA
CAAGAAGGAAACACACTTGATTCACCGCCGCATTGAGCGCGGCACTACAT
TTACCTTTCAATTTCGCAACCTTTGTTATATTGATACCAAACCCTTGTCT
TTAGGTTTGAAAACCTGTTTTCATTTTGAATTGGGGAAAAATTCCTGTTT
AATTTTTTGCACTGGGACCCCCCTAAGGTGTGTCTGTTTTTTTATCCCCT
CAACGAAACCCTAAAAAAAAAAAATTCAATGACTGCCCACCAAACACCGC
CCCCCCCCTACAAAGAACCTGCCACGGAAAAACACACCCCCCCCCCTCTT
CCTATACAAGACACCCACAAAACCAACGCTCAAACTATTCGCAACGACCC
ACACGCCCCGAAGGCACAAGAACATCACTATTTCGCCCCCCCCACACCCA
CCCCCACTGGTTTCCCCCCCACAGGAATTCTCTCTTGGCCCCCGCCCAAC
TATCCTTCCCAAACATCTTCTCTCCCCTCCCCAACTTCATTCAAAAAAAC
ATTTCTTTTTTTCGCGCACCTAAAAAAAATTTTTTTGCCCCAGTCAGACA
AAAAGCAACACTCCCTTTATCCCCCCTTCTTCTTCTTCCTCCTTCTTCCC
AACACCGGTGTTCATCACAACCCCGCCTCCCCCTTTCCTTTTTTCT
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