DY258317
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.323e-44 Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1 Query: 37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417 MK +V+P G+FKKHWQNYVKTWFNQP RK + VKIFPRPTAGPLRPVVHG+TLKYNMK G+GFTLEELKAAGIPKKLAPTIGIS+DH+RKNRSLEG SNV ++ ++ FP+ Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPR 127 HSP 2 Score: 67.3958 bits (163), Expect = 1.452e-13 Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 2 Query: 374 QRLKTYQAKLVGFPRRARRIRAGDSAHEELATPTPGPGPYMTITLEKPTAHLDKATQDRNSFQA 565 QRLKTY+AKLV FPRRAR+++AGDS EELA T G YM I EK L K T + S A Sbjct: 113 QRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNA 176 HSP 3 Score: 27.7202 bits (60), Expect = 1.452e-13 Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 567 YEQLRIDRANDRHFGARLSNA 629 Y+++R++R N RH GAR A Sbjct: 177 YDKIRLERTNKRHAGARAKRA 197
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.947e-44 Identity = 86/127 (67.72%), Postives = 100/127 (78.74%), Query Frame = 1 Query: 37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417 MK +V+P G+FKKHWQNYVKTWFNQP RK + VKIFPRPTAGPLRPVVHG+TLKYNMK G+GFTLEELK+AGIPKKLAPTIGI+VDH+RKNRSLEG SNV ++ ++ FP+ Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPR 127 HSP 2 Score: 67.3958 bits (163), Expect = 3.184e-13 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 374 QRLKTYQAKLVGFPRRARRIRAGDSAHEELATPTPGPGPYMTITLEKPTAHLDKATQDRNSFQA 565 QRLKTY+AKLV FPRRAR+++AGDS EELA T G YM I EK L K T + S +A Sbjct: 113 QRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKA 176 HSP 3 Score: 26.5646 bits (57), Expect = 3.184e-13 Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 3 Query: 561 RPYEQLRIDRANDRHFGARLSNA 629 + ++++R++R N RH GAR A Sbjct: 175 KAFDKIRLERTNKRHAGARAKRA 197
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.849e-44 Identity = 86/131 (65.65%), Postives = 101/131 (77.10%), Query Frame = 1 Query: 37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429 MK +V+P+ +F+KHWQNYVKTWFNQP RK + VKIFPRPT+GPLRPVVHG+TLKYNMK AG+GFTLEELK AGIPKKLAPTIGISVDH+RKNRSLEG SNV ++ ++ FP+ Q Sbjct: 1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQ 131
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.120e-43 Identity = 85/127 (66.93%), Postives = 100/127 (78.74%), Query Frame = 1 Query: 37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417 MK +V+P G+FKKHWQNYVKTWFNQP RK + VKIFPRPT+GPLRPVVHG+TLKYNMK G+GFTLEELKAAGIPKKLAPTIGI+VDH+RKNRSLEG +NV ++ ++ FP+ Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPR 127 HSP 2 Score: 73.1738 bits (178), Expect = 1.301e-15 Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 2 Query: 350 LRVLHLMCQRLKTYQAKLVGFPRRARRIRAGDSAHEELATPTPGPGPYMTITLEKPTAHLDKATQDRNSFQA 565 L L QRLKTY+ KLV FPRRAR+++AGDS EELA T G Y+ I EKPT L K T + SF+A Sbjct: 105 LEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKA 176 HSP 3 Score: 28.8758 bits (63), Expect = 1.301e-15 Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 3 Query: 558 FRPYEQLRIDRANDRHFGARLSNA 629 F+ ++++R++R N RH GAR A Sbjct: 174 FKAFDKIRLERTNKRHAGARAKRA 197
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 3.258e-43 Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = 1 Query: 64 GYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429 G+FKKHWQNYVKTWFNQP RK + VKI PRPTAG LRP+VHG+TLKYNMK +GRGF+LEELKAAGIPKKLAPTIGI+VDH+R+NRSLEG +NV +EDL GQ+ FP+ S+ Sbjct: 6 GHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASR 127
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 2.186e-39 Identity = 81/127 (63.78%), Postives = 94/127 (74.02%), Query Frame = 1 Query: 37 MKLRHVLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417 MK +V+P G+FKK W+NYVKT FNQP K VKIFPRPTAGP+RPVVH +TL YNMK AG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG +NV ++ ++ FP+ Sbjct: 1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPR 127
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 4.880e-31 Identity = 66/122 (54.10%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 52 VLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPK 417 +LP G+F K WQ +VKTWFNQP RK + E FPRP AG L+P+V +T+KYN K GRGFTLEELK AGIP K APT+GI+VDH+RKNRSLE +NV ++ + FP+ Sbjct: 7 MLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPR 128
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 2.771e-26 Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 1 Query: 55 LPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429 LP +F K WQ YVKTWFNQP RK KI PRP +RP V T++YNMK AGRGFTLEELKAAG+ +++A TIGI VDH+R+NRS E NV ++ + FP+ Q Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQ 132
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3) HSP 1 Score: 119.783 bits (299), Expect = 3.619e-26 Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1 Query: 67 YFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFPKTCSQ 429 +F K WQ V+TWFNQP RK +I PRP +GPLRPVV T++Y+ K AGRGFTLEELKAAGI KK+A TIGISVD +R+NRS E +NV +++ ++ FP+ ++ Sbjct: 13 HFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAK 133
BLAST of DY258317 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.174e-26 Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1 Query: 52 VLPAGYFKKHWQNYVKTWFNQPDRKNPTTSCSTENVVKIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGISVDHQRKNRSLEGPPSNVSEVEDLPGQVGWFP 414 VL +F+K WQ VKTWFNQP RK +I PRP +GPLRP+V+ T +YNMK +GRGF+L+E++AAG+ K A TIGI+VDH+R+N S+EG NV+ ++ ++ FP Sbjct: 7 VLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFP 127 The following BLAST results are available for this feature:
BLAST of DY258317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258317 ID=DY258317; Name=DY258317; organism=Citrus clementina; type=EST; length=1296bpback to top |