DY258360

Overview
NameDY258360
Unique NameDY258360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1282
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1098 contig Ccv1_Contig1098:1..1282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258360 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.034e-33
Identity = 96/284 (33.80%), Postives = 143/284 (50.35%), Query Frame = 1
Query:    4 LSSLQPLWKPVSRNEIKKEIMDIYEYERAKKVSALDCNQSRIAITAKMWTVENQSVGYMAVTAHFIDDSWTLQSHLLRFIPVSTPHTAEVVCDTLLHCLMDHNIDRKLSALIVDNCSYNEQMIQYLLLKLGKDD--LIMHGQLFHIHCFVDTLNLIVKDGLSVISDAIAKIRDSVSFWSESSKRMEKFEEIAHLLGITSDRKLVLDCAESWNSTYLMISTALQYK-SVFSLLEQHEGQYGCL-PSEKDWELA-HILKEN*KVIRCYSLFSNVKYPTSICFFHLF 840
            + SL+P +   SR   +K IMD+Y  E+ K    L   QSR + T  MWT   Q+  YM VT H+IDD W LQ  ++ F  V   HT + +  T    ++  NI++KL AL +DN S NE  +  ++  L   D  L+  G  FH+ C    LNL+ KDGL+VI+  I KI+  V     S  + E+  + A    +   + +  D +  WNSTYLM+  AL YK ++  L      +Y  + P  ++W++A  + K   K      L S  +Y T+  F+  F
Sbjct:  255 VKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWT-SCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKFFDLTELLSGTQYSTANLFYKGF 537          
BLAST of DY258360 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.343e-32
Identity = 87/242 (35.95%), Postives = 125/242 (51.65%), Query Frame = 1
Query:    4 LSSLQPLWKPVSRNEIKKEIMDIYEYERAKKVSALDCNQSRIAITAKMWTVENQSVGYMAVTAHFIDDSWTLQSHLLRFIPVSTPHTAEVVCDTLLHCLMDHNIDRKLSALIVDNCSYNEQMIQYLLLKLGKDD--LIMHGQLFHIHCFVDTLNLIVKDGLSVISDAIAKIRDSVSFWSESSKRMEKFEEIAHLLGITSDRKLVLDCAESWNSTYLMISTALQYK-SVFSLLEQHEGQYGCL 720
            + SL+P +   SR   +K IMD+Y  E+ K    L   QSR + T  MWT   Q+  YM VT H+IDD W LQ  ++ F  V   HT + +  T    ++  NI++KL AL +DN S NE  +  ++  L   D  L+  G  FH+ C    LNL+ KDGL+VI+  I KI+  V     S  + E+  + A    +   + +  D +  WNSTYLM+  AL YK ++  L      +Y CL
Sbjct:  200 VKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWT-SCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYVCL 440          
The following BLAST results are available for this feature:
BLAST of DY258360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRA1_MAIZE1.034e-3333.80Putative AC transposase OS=Zea mays PE=2 SV=2[more]
TRAC9_MAIZE4.343e-3235.95Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BD04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258360 ID=DY258360; Name=DY258360; organism=Citrus clementina; type=EST; length=1282bp
GTGTTATCCTCTCTTCAACCTTTGTGGAAACCAGTGTCCCGAAATGAAAT
TAAAAAGGAAATTATGGATATATATGAGTATGAAAGGGCTAAGAAAGTGA
GTGCATTGGACTGCAATCAGAGTAGGATTGCCATTACGGCAAAAATGTGG
ACTGTAGAAAACCAATCCGTAGGATATATGGCAGTTACAGCACACTTCAT
TGATGACTCTTGGACATTACAGAGTCATCTTTTGAGGTTTATTCCTGTGT
CTACTCCACATACAGCTGAAGTAGTTTGTGACACATTACTGCACTGTTTG
ATGGATCATAACATTGATCGGAAGTTATCTGCCCTGATTGTTGATAATTG
TAGTTATAATGAGCAAATGATTCAATATCTTTTATTGAAGCTCGGGAAAG
ATGATTTAATCATGCATGGGCAGTTATTTCATATTCATTGTTTTGTCGAT
ACTTTAAATTTGATTGTGAAGGATGGGTTGAGTGTGATTAGTGATGCAAT
TGCTAAGATTCGTGATAGTGTTAGTTTTTGGTCAGAATCATCTAAAAGAA
TGGAAAAGTTTGAAGAAATCGCTCATTTGTTAGGCATTACAAGTGATAGG
AAATTAGTGCTTGATTGTGCTGAGAGTTGGAATTCAACATATCTCATGAT
TTCCACTGCATTGCAGTATAAAAGTGTGTTCTCTCTATTAGAGCAACACG
AGGGACAGTATGGTTGTTTGCCTAGTGAGAAGGATTGGGAATTGGCACAC
ATCTTGAAAGAAAATTGAAAAGTTATACGATGTTATTCATTGTTTTCTAA
TGTCAAGTATCCCACTTCCATTTGTTTTTTTCACCTGTTTATGAGATAAA
ATTGTCTTTAAAGAATTGCTTTTCATCTAGTTTTGATGAGATTAAAAAAT
TGGCAAGAAGCATGAAAAAAACTTCCAAAAAATTTTGGAAGGAATACCTT
GAAATATAACCTGGGGCAGGGGGTTTGGAATCAAAGGAAAAAAATAAATT
TGATTGAAATTTATTTCCCTATGCTTTTTTGGGGGGATTTTTTCCTTTCT
TTTTCACAAAAGGAACAACCCCTTTTTAAGGATTTGGGCAAAAAGAAATA
CACCAAAATGTTCCACCCCCTCAAGGGTATATTCTCGAAATTGGGAAATT
TTCCCCCCCCCCCCCCCCTTTTTAAAACTCGTTCTCCTTAAAAAAAAAAA
AACACACCCCAATTTTTTATATTTTTTTTGAGGAATTATTCAAAAAAATA
TTCTCTAAAAAAAAAACCCACACAAAACCACC
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